PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001667.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 94aa MW: 10420.6 Da PI: 8.2318

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001667.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	50.5	8.1e-16	1	71	24	94
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkve.eenlk.snvekeesast 94 vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + + +++ +++ + + +++ k ++++++ + + FANhyb_rscf00001667.1.g00001.1 1 VSVPCSSLFDIVTVRCGHCTNLWSVNMAAACQSLSWQDV-QAQHNHN-AQNYRIDsGSSSKgNKKIATRDSIA 71 8*******************************9999985.4444433.3333332022222022223333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-17	1	72	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
VSVPCSSLFD IVTVRCGHCT NLWSVNMAAA CQSLSWQDVQ AQHNHNAQNY RIDSGSSSKG 60 NKKIATRDSI ADHRATEERV NRREIANFSL SICL

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004287301.1	7e-52	PREDICTED: axial regulator YABBY 5 isoform X1
Swissprot	Q8GW46	4e-22	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2P6RIV2	3e-40	A0A2P6RIV2_ROSCH; Putative transcription factor C2C2-YABBY family
STRING	XP_004287301.1	3e-51	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-24	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]