PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001669.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 524aa    MW: 58346.5 Da    PI: 6.2028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001669.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22e-1151505231374
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sse 76 
                                     lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ + k+   +++
  FANhyb_rscf00001669.1.g00001.1 150 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDK 228
                                     689***************************************************9666666666777777777789999 PP

                            GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgs 149
                                     +  al+l +e++P ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+++L++R+++pp  +lRiTgvg 
  FANhyb_rscf00001669.1.g00001.1 229 KEEALRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIHSLTTRAGQPPvsRLRITGVGL 307
                                     999*************************************99873333667*************9999899******** PP

                            GRAS 150 pesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228
                                          +++l+ +ge L+ +A++lg+++ef+  v+++le+l++e++++ +gE+l+Vn++lqlh +++es    +   +vL
  FANhyb_rscf00001669.1.g00001.1 308 ----CADRLQIIGEELEAYADSLGLSVEFTC-VESNLENLKPEDIKLYEGEVLVVNSILQLHCVVKESRGALN---SVL 378
                                     ....***************************.79*******************************88877777...8** PP

                            GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
                                     +++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+e
  FANhyb_rscf00001669.1.g00001.1 379 QMIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVE 457
                                     ******************************************************************************* PP

                            GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     rhe++ +Wr+r+++aGF+ +p++  +++qak  l k k  +gy+v ee+g+lvlgWk+rp+v++S+W+
  FANhyb_rscf00001669.1.g00001.1 458 RHERVDQWRRRMSRAGFQGAPIK--MMAQAKQWLGKNKvCEGYTVVEEKGCLVLGWKSRPIVAASCWK 523
                                     *********************96..789**********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.717124504IPR005202Transcription factor GRAS
PfamPF035146.9E-113150523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MTEHECTDHE IRSNRMSDLE LHGLNHSYMA CYSSYPYMAS LGQEGSANDC SSLINPYSDH  60
ESRDHKRLKR TISIDDSLSS ITSINGGMIS RSSSTNSLTT LPRLHFRDHI WTYTQRYLAA  120
EAVEEAAAAM INAEENGAEQ EDGTADGMRL VQLLIACAEA VACRDKSHAS ALLSELRANA  180
LVFGSSFQRV ASCFVQGLAS RLALVQPLGA VGFVPSKLNA KDYALMDKKE EALRLVYEIC  240
PHIQFGHFVA NSSILEAFEG ESFVHVVDLG MTLGLPHGDQ WRGLIHSLTT RAGQPPVSRL  300
RITGVGLCAD RLQIIGEELE AYADSLGLSV EFTCVESNLE NLKPEDIKLY EGEVLVVNSI  360
LQLHCVVKES RGALNSVLQM IHELSPKVLV LVEQDSSHNG PFFLGRFMEA LHYYSAIFDS  420
LDAMLPKYDT RRAKMEQFYF AEEIKNIISC EGPARVERHE RVDQWRRRMS RAGFQGAPIK  480
MMAQAKQWLG KNKVCEGYTV VEEKGCLVLG WKSRPIVAAS CWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6815752226378Protein SCARECROW
5b3h_A2e-6815752225377Protein SCARECROW
5b3h_D2e-6815752225377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309796.20.0PREDICTED: DELLA protein RGA2-like
TrEMBLA0A2P6P5500.0A0A2P6P550_ROSCH; Putative transcription factor GRAS family
STRINGXP_004309796.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-80RGA-like 1