PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001700.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 520aa    MW: 56497.9 Da    PI: 7.0444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001700.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33279336260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  FANhyb_rscf00001700.1.g00004.1 279 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 336
                                     8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-28275337IPR003657WRKY domain
SuperFamilySSF1182906.54E-25277337IPR003657WRKY domain
SMARTSM007745.2E-37278336IPR003657WRKY domain
PfamPF031061.0E-25279335IPR003657WRKY domain
PROSITE profilePS5081123.456279337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MASSSGSLDT SANSHPSNFT FSTHPFMNTS FSDLLSSGAE PTNPITRYSG HGLSDRIAER  60
TGSGVPKFKS LPPPQLPISP PSVSPSSYFA IPPGMSPAEL LDSPVLLSSS NILPSPTTGS  120
FAAQAFNWRT NSGSGTNNNN NNNSQSVKKE HKNYSDFSFQ TQTRPPPTSS SAIFQSSNSS  180
IQTAQEQAWN NYLGPSKQDE FSQGKSMVKP DYGSSVQSFS SEMATNMQGN NVQANSNGGF  240
QSDQYSNYNS TNTNTTTTTT TNNNNNQLQS HQYLNRRSDD GFNWRKYGQK QVKGSENPRS  300
YYKCTYPNCP TKKKVERSLD GQITEIVYKG NHNHPKPQNT RRSGSSVASS HAVQASSQTT  360
NDIPDHSFGS HGNSQMDNSV GTPENSSLSL GDDELDQSSQ RSKSGGGDDG SANRPLPSNN  420
TNNNNMNNHH NVAPAMRPMT HHSTNNAANN NPIQNLRLPT SEGQAPFTLE MLQSPGSYGF  480
AGFENSMGSY MNQTQLNDNN MFPKTKDEPR DDAFFESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-152793371574WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294758.10.0PREDICTED: probable WRKY transcription factor 25
TrEMBLA0A2P6QKI30.0A0A2P6QKI3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294758.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-35WRKY DNA-binding protein 33