PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001720.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 657aa    MW: 72507 Da    PI: 9.5723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001720.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-08559608147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                     r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  FANhyb_rscf00001720.1.g00002.1 559 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFenaKHRTYVDLKDKWKTL 608
                                     678999********************9766667**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.87E-8372461IPR029071Ubiquitin-related domain
PROSITE profilePS500538.546378448IPR000626Ubiquitin domain
CDDcd017690.00809381448No hitNo description
PROSITE profilePS5129415.459554613IPR017930Myb domain
SMARTSM007176.2E-8558611IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10559609IPR009057Homeodomain-like
CDDcd116607.08E-17560610No hitNo description
SuperFamilySSF466891.14E-15560641IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MCSSWYDFGE MALQKRLDYG FNGFQVPITP RAPRSARRRS AISKRVEDNP MGAFDLLATV  60
AGNCLDGDKP LKVEPSDQGS CDRKFFVSDN ISQGHNQSCS SKESPVHQNE SHSVMTTSNC  120
SERFVSDMLV GGKCKNEIGS FTSKIQAGFS MYRESGECKL DGEAKVIVKD ETNKRGKVLI  180
GTGADNVEDP MVWEGEPPAL VSSDSSTKVP ICVDHIPQKP IPASRDDIKV VSRDDDENSS  240
GCTHPSTTTR YLRTAPRIGD RRIRKILASR YWKATPKMKD EAHSNSYRDM RPMYHGRKNG  300
YKRQRSQMTV PFKKRRLFDR STVGKSDGGI TSESFFDSGK KGITGNAPAS CSKMQGANAI  360
SSSVAGQHSA FQSRNSHVKL RIKSFRVPEL FIEIPETATV GSLKKTVMDA VTAVLGGGLC  420
VGVLLQGKKV RDDSKTLQQT GISQDDQLDS LGFTLEPNPS HTPTSLCSGD SPRMLPCDAL  480
QPLIRYAPDP SSEASLEPHM AALGSFIESD HDSAPSPTDT STTDSKALVV VPRMSAEALA  540
VVPGNRKSKR FDIGQRRIRR PFSVSEVEAL VQAVEKLGTG RWRDVKMRAF ENAKHRTYVD  600
LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS QQQAKQQLKH PESCVLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-565436491107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465323.10.0PREDICTED: LOW QUALITY PROTEIN: telomere repeat-binding protein 5
SwissprotQ6R0E31e-159TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2P6QIX70.0A0A2P6QIX7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGEMJ099100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-135TRF-like 2