PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001794.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19706.5 Da    PI: 8.4532
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001794.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF404.9e-132271149
                                    S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklyey 49
                                    k+ien   r vtf+kR+  i  K +EL  +LC+aev v++fs+  k y y
  FANhyb_rscf00001794.1.g00003.1 22 KKIENAEDRLVTFTKRKSVIYNKCNELAaTLCGAEVGVVVFSEFEKPYSY 71
                                    68*************************559************98887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.4181475IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-181474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-201590IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-101636IPR002100Transcription factor, MADS-box
PfamPF003191.0E-152371IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-105273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
FVFVFLTMAI KKTRGKQKIE IKKIENAEDR LVTFTKRKSV IYNKCNELAA TLCGAEVGVV  60
VFSEFEKPYS YGHPSIESIA DRFLNQQSPQ ETNGDNIASH VVGAYKQARI TEILNKYNEL  120
QEKLSNEQLR EKELQQREKA RASEGLGWWQ RPIKELDLEG TKENVCFLPA PP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305560.11e-118PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P6RCY51e-72A0A2P6RCY5_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305560.11e-117(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.19e-30AGAMOUS-like 57