PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001834.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 615aa    MW: 70146.4 Da    PI: 8.0573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001834.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16189284198
                                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                     ff++ +++++++++ l +p +fae++ +   +s  ++l+ ++g++W+v++  + +++  +  +G  +F  +n+L egD+
  FANhyb_rscf00001834.1.g00002.1 189 FFSIILQPYNFTKCYLHMPTEFAEKYLSG--CSEAIKLQGSHGKQWDVRFA-STNPSLPITCRGCIKFLTDNNLAEGDV 264
                                     889999********************544..8889***************4.33443455558**************** PP

                                     EEEEE-SS.SEE..EEEEE- CS
                              B3  80 vvFkldgr.sefelvvkvfr 98 
                                     ++F+l+++  +  l+v+++r
  FANhyb_rscf00001834.1.g00002.1 265 CLFELMKSkADMVLKVSILR 284
                                     *****987677777777766 PP
2B351.12.5e-163724571399
                                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     +  l++p +fa+++ ++ +e   ++l d++g  W+v+ +  + +s+++ +++G + F ++++L++gD+++F+l++r++ 
  FANhyb_rscf00001834.1.g00002.1 372 NYHLCIPVDFARKYFSSCAE--SIKLHDSNGGHWDVQRTStNASSSGHRFSNGYNVFLRDKKLEQGDVCLFELIKRNDV 448
                                     34499*********988555..6**************9874666666***************************99888 PP

                                     ..EEEEE-S CS
                              B3  91 elvvkvfrk 99 
                                      l+v+v+r+
  FANhyb_rscf00001834.1.g00002.1 449 LLKVSVLRA 457
                                     899999987 PP
3B356.35.8e-185266101299
                                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     +   lv+p +f ++h g+ e+++ +tle ++g++  v++iy+  +++  l++GW+ F ++n+L+egD++vF+l+ +++ 
  FANhyb_rscf00001834.1.g00002.1 526 QIEKLVVPARFGTKHLGD-ECPVLITLEAPNGKQRHVRCIYDTDRKK--LSDGWSAFSSENNLEEGDVCVFELIASKDV 601
                                     44679**********666.5*******************99888877..9************************99999 PP

                                     ..EEEEE-S CS
                              B3  91 elvvkvfrk 99 
                                      l+ ++fr+
  FANhyb_rscf00001834.1.g00002.1 602 VLKASIFRA 610
                                     888888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-61774IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-71773IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-21181285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20183284IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-16188284No hitNo description
PfamPF023621.4E-14189284IPR003340B3 DNA binding domain
SMARTSM010199.0E-11189286IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73189286IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-19356458IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-17357458IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.773360458IPR003340B3 DNA binding domain
CDDcd100171.68E-14362456No hitNo description
SMARTSM010193.6E-9363458IPR003340B3 DNA binding domain
PfamPF023623.8E-13372457IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026515611IPR003340B3 DNA binding domain
SMARTSM010191.3E-8517611IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17524609IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-16525610IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18525610IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-17529609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MESKTHRRSD VPARAPFHFF RTILQPDQQR QKLNLPTKFV KKFGKELSDV ATMSVPTGHV  60
WPVGLERVNK RVWTCTEISY PCQEQSSDLH PVVLLQEDIR NDDVSSSNKC IQRGATSKEN  120
MGYQSDDATR RKKTIYVDQG DTIDSSIVTK SAPASLKKNR MASSLELTKQ NDDQKVIQAT  180
SMFKPKNPFF SIILQPYNFT KCYLHMPTEF AEKYLSGCSE AIKLQGSHGK QWDVRFASTN  240
PSLPITCRGC IKFLTDNNLA EGDVCLFELM KSKADMVLKV SILRAAEYED TIHSSNVKKS  300
KRANLNKSIM HDTDDFSTRQ SEDDGKFSFD IFSHTFPKSK LKFPTETEKV IYATKMFKLK  360
NPFFVAILQY NNYHLCIPVD FARKYFSSCA ESIKLHDSNG GHWDVQRTST NASSSGHRFS  420
NGYNVFLRDK KLEQGDVCLF ELIKRNDVLL KVSVLRASEY DDRVHDKEMK VNETKNRRYR  480
NEDEEDLPDL VGRLDDKGKS TAHKLSIEDE ENIEICNSGT LYYSSQIEKL VVPARFGTKH  540
LGDECPVLIT LEAPNGKQRH VRCIYDTDRK KLSDGWSAFS SENNLEEGDV CVFELIASKD  600
VVLKASIFRA AEYAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-2317461333145B3 domain-containing transcription factor VRN1
4i1k_B8e-2317461333145B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469443.10.0PREDICTED: B3 domain-containing protein Os12g0591400-like isoform X1
TrEMBLA0A2P6SE530.0A0A2P6SE53_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004307175.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2631733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-24related to vernalization1 1