PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001885.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 366aa    MW: 40483.3 Da    PI: 6.5582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001885.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.98.4e-3397204199
                                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 
                                     f+k ltpsdv+k++rlv+pk++ae++           gg+  ++  l++edesg+ W+++++y+++s++yvltkGW+++
  FANhyb_rscf00001885.1.g00001.1  97 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggggggesGGE--KGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRY 173
                                     99******************************98865444..6679********************************* PP

                                     HHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  69 vkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                     vk+++L++gD+v+F++ ++++++l+++++r+
  FANhyb_rscf00001885.1.g00001.1 174 VKEKRLDAGDVVLFERRRNDSERLFIGWRRR 204
                                     ***************99889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4091207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3292203IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-2896195No hitNo description
SMARTSM010191.8E-2697205IPR003340B3 DNA binding domain
PfamPF023626.7E-3097204IPR003340B3 DNA binding domain
PROSITE profilePS5086314.19897205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSLNHFSPSE LQETQWWNNS TTSQQNQHQQ PPSSFTMDAF QPQLYQNYHP TWLGSQIAQQ  60
PPTLNFNINH QHTDAGEGEL HHSELQIDMG DDKETMFEKP LTPSDVGKLN RLVIPKQHAE  120
KYFPLGGGGG GESGGEKGLL LSFEDESGKC WRFRYSYWNS SQSYVLTKGW SRYVKEKRLD  180
AGDVVLFERR RNDSERLFIG WRRRAVQESS GAGGGGSTNT SAHVSGSSGG GGESGGGRGG  240
WTRMFYSAPQ SYPAHHHHSV PYPPDYLQHA ATAGSPVQNQ TPSSSSGGNS RILRLFGVNL  300
ECQQQQDDES EPSTPDGSSL SSQGPTHHQF YPNPTNAYYG DHRVPTLLLV GPLLDYLIAV  360
MTLKSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49922043113B3 domain-containing transcription factor NGA1
5os9_B2e-49922043113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303521.20.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI31e-69Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2P6RC960.0A0A2P6RC96_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004303521.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-61B3 family protein