PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001917.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CO-like
Protein Properties Length: 426aa    MW: 47371 Da    PI: 5.8008
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001917.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.2e-081959438
                        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                    r+C+++ + + + +C+ ++ +lC  C +++H        H+
  FANhyb_rscf00001917.1.g00001.1 19 RVCDTCRSAPCTVYCRADSAYLCSGCDTTIHAAnrvasrHE 59
                                    79*****************************5556666676 PP
2zf-B_box33.11.1e-1061106342
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                      ++C+ +e+ ++ +fC+ +   lC  C   +H+       H++vp+
  FANhyb_rscf00001917.1.g00001.1  61 VWVCEACERAPAAFFCKADAASLCTACDADIHSAnplarrHQRVPI 106
                                     689*****************************66899999**9997 PP
3CCT70.15.5e-24357400144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  FANhyb_rscf00001917.1.g00001.1 357 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 400
                                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-81663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681663IPR000315B-box-type zinc finger
CDDcd000212.74E-81963No hitNo description
PfamPF006431.2E-51960IPR000315B-box-type zinc finger
PROSITE profilePS5011911.87459106IPR000315B-box-type zinc finger
PfamPF006431.4E-860106IPR000315B-box-type zinc finger
CDDcd000211.30E-1062106No hitNo description
SMARTSM003368.4E-1264106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648357399IPR010402CCT domain
PfamPF062038.7E-18357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLLKEESNGA AAAANSWARV CDTCRSAPCT VYCRADSAYL CSGCDTTIHA ANRVASRHER  60
VWVCEACERA PAAFFCKADA ASLCTACDAD IHSANPLARR HQRVPILPIS GGQIMVGSAP  120
ADTTEDGFLS QEGDEEAMDE EDEDEAASWL LLNPVKNSNN HNSNNNPNNN NNGFFFGVEV  180
DEYLDLVEYN SSDQNQFSGT TATNDQHNYG VPHKISYGGD SVVPVQYGEG KVTQMQMQQK  240
HNFHQLGMEY ESSKAAYGYD GSISHTSGQS RSEMMFYWCK DKLSFNVAKN MNVSILPFSF  300
CLPLLIQVSV SSMDVGVVPD STMSEMSVCH PRTPKGTIDL FNGPTIQMPT QLSPMDREAR  360
VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIKGRFAKRT DIEVEVDQMF STSLMRETGY  420
GIVPSY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304173.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-139COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB6VEH40.0B6VEH4_FRAAN; CONSTANS
STRINGXP_004304173.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-112CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]