PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00001959.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 798aa MW: 88564.5 Da PI: 6.9342

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00001959.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.6e-09	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE++ + a +q G++ +++I r+++ + q++++++ + FANhyb_rscf00001959.1.g00002.1 68 AWTHEEEQSFFAALRQVGKN-FEKITRRVQ-SKNKDQVRHYYYRL 110 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.43E-11	59	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-6	62	113	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.931	64	115	IPR017884	SANT domain
SMART	SM00717	1.0E-6	65	113	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-6	68	111	No hit	No description
Pfam	PF00249	8.4E-7	68	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence Send to blast
MNCEASSSQL EPEHEHVDFG FDRIMGSEAH PRQESILVQE RDPALGLSTS NHVAVQQPVK 60 KPTRQWAAWT HEEEQSFFAA LRQVGKNFEK ITRRVQSKNK DQVRHYYYRL VRRMNKLLGP 120 GLYLDSKNSK DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KIFMEALEHQ LLKDRKKTVR 180 KRPSQGENCP PEAPSTVPNQ NRPSEHDRPV KLVLVDSHNI QKSGPGKASL KRSGSIGVNR 240 GNKGDASTVK PARQRRKPAG IVPSTAAYKK WEKAAIAGVS LVADAAEHLE RTIEKEVGQD 300 KSSAERNSAV PVGNFLPPMP DFSQNIYAEN NIHNSMKLKL QLFPIDDSTR RALEMDKHNP 360 HLELTLPTRK KISSVMEHLN RKWGSSSVAS GELMLFPNSV QQDSPTGYLR WTQDSNVSAG 420 DVYSMIGSPP VFRLRYGWFS STELGSVLSQ APVAPFRILG EHDNVEKMKD PVMESTPTSP 480 PSASNQCGDI HNDLLTSVTK NHSLDQTSDG EPNQKNNLVG DPTKSTSWHE KVAGDQGILR 540 HQGEMDGLRL HNGTALSAKE WADSLTNISV GDLLTGVTHD LDANCIDQTL TGRSQCLPQI 600 PFSCDSFDAA IAAHISRQKN KMECEPPMVS HVSSIWDAEE TCDAFVFQKN SAFHQQSGIA 660 LPGDCKQIAS TSSAGCDRMV EDLPVVETPI NDPQGDPMDE CQSDPHILGN SVKDFNALAD 720 IYWPESLGPL DLDLPSSKYH NEDLILNDSL SGLNRLIASS LDAFQNCSFF GSNKKEPTPS 780 VEARETISFS DFKIGNGI

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence Send to blast

MNCEASSSQL EPEHEHVDFG FDRIMGSEAH PRQESILVQE RDPALGLSTS NHVAVQQPVK  60
KPTRQWAAWT HEEEQSFFAA LRQVGKNFEK ITRRVQSKNK DQVRHYYYRL VRRMNKLLGP  120
GLYLDSKNSK DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KIFMEALEHQ LLKDRKKTVR  180
KRPSQGENCP PEAPSTVPNQ NRPSEHDRPV KLVLVDSHNI QKSGPGKASL KRSGSIGVNR  240
GNKGDASTVK PARQRRKPAG IVPSTAAYKK WEKAAIAGVS LVADAAEHLE RTIEKEVGQD  300
KSSAERNSAV PVGNFLPPMP DFSQNIYAEN NIHNSMKLKL QLFPIDDSTR RALEMDKHNP  360
HLELTLPTRK KISSVMEHLN RKWGSSSVAS GELMLFPNSV QQDSPTGYLR WTQDSNVSAG  420
DVYSMIGSPP VFRLRYGWFS STELGSVLSQ APVAPFRILG EHDNVEKMKD PVMESTPTSP  480
PSASNQCGDI HNDLLTSVTK NHSLDQTSDG EPNQKNNLVG DPTKSTSWHE KVAGDQGILR  540
HQGEMDGLRL HNGTALSAKE WADSLTNISV GDLLTGVTHD LDANCIDQTL TGRSQCLPQI  600
PFSCDSFDAA IAAHISRQKN KMECEPPMVS HVSSIWDAEE TCDAFVFQKN SAFHQQSGIA  660
LPGDCKQIAS TSSAGCDRMV EDLPVVETPI NDPQGDPMDE CQSDPHILGN SVKDFNALAD  720
IYWPESLGPL DLDLPSSKYH NEDLILNDSL SGLNRLIASS LDAFQNCSFF GSNKKEPTPS  780
VEARETISFS DFKIGNGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468125.1	0.0	PREDICTED: TSL-kinase interacting protein 1 isoform X1
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A2P6RB06	0.0	A0A2P6RB06_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004304454.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9883	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1