PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002011.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 187aa MW: 20886.2 Da PI: 7.9839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002011.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H FANhyb_rscf00002011.1.g00001.1 30 YACTFCKRGFSNAQALGGHMNIH 52 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-6	27	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.6E-5	27	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.281	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051973	Biological Process	positive regulation of telomerase activity
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKRNDTVEKF NRSKWTSNDQ ISGLGQAKSY ACTFCKRGFS NAQALGGHMN IHRRDRARII 60 RQYSEDQNQG SSSDAVKCSS TSAHHDPLRA DNSEDKTLLQ LERKGTNMIS RKPSCPSTTR 120 SENHEIIVAR SEGKISSSED VQAQLQLPLF LEEPVVSNGG GKFVELDLEL RLGPEPPETN 180 FSTREFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466534.1	1e-124	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A314XVT0	6e-49	A0A314XVT0_PRUYE; Transcriptional regulator TAC1
STRING	XP_004305187.1	1e-111	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3335	31	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	2e-16	C2H2 family protein