PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002064.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 635aa    MW: 70063.6 Da    PI: 8.9662
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002064.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-133914611690
                                     EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                      ++p+ f++++ g++++      l+ + g+ W v+l  +  ++r v+ +GW++F+k + L+ gDf++F+ldg+s f
  FANhyb_rscf00002064.1.g00002.1 391 WCIPRAFVKNFnGHVPR---FCGLRGPCGNLWAVNL--KVIKNRLVFHDGWQSFAKHHFLEIGDFLTFTLDGESIF 461
                                     589*****888665654...48999***********..999999**************************998777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048621.5E-6332187IPR006946Domain of unknown function DUF642
SuperFamilySSF497858.5E-595188IPR008979Galactose-binding domain-like
PfamPF048626.8E-7199297IPR006946Domain of unknown function DUF642
SMARTSM010194.4E-5369469IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-19390471IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-17390470IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10392461IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012393469IPR003340B3 DNA binding domain
CDDcd100171.31E-14393466No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASFVVFLRF LATITLCIAY ASAYATQHLD GELPNGHFEE SPRSSNLKKT VILGKHSLPK  60
WEIDGLVEYI SGGPQPGGFY FPVARGVHAV RLGNEASISQ NVNVNPGSVY SLTFSTTRTC  120
AQDEVLRVSV PGQSAELSVQ TLYSSDGGDT YAWAFKATSK VVRVTFHNPG IQEDPACGPL  180
LDAIAIKEII LPQKYIRGNL VKNGGFENGP HVFKNFSTGV LLPPQLLDQI SPLPGWIIES  240
LKPVKYIDRK HFSVPSGFTA IELVAGRESA IAQIIRTIPN KSYNLMFTIG DAKNGCHGSM  300
MVEAFAGDVL VTERATIKNH FLIRMTHSAV TRYCPLWARR SSRFCFRQLR SSFPVGHPSW  360
DCSSINMLNL GVLIPSEAAE PPKGLALDWR WCIPRAFVKN FNGHVPRFCG LRGPCGNLWA  420
VNLKVIKNRL VFHDGWQSFA KHHFLEIGDF LTFTLDGESI FDVIIYGKSY CEKNTEAAKN  480
MIGDVVDRTI NTDIILGKRL APDLVEETSI GPISSNPANL FFKTTFTRSL QYNLKIPARV  540
VKAAANVRLS TALYEAFPVL IAENSKQNCQ SCRSNPGCGN SKLAACRISE CTAIQISSQN  600
GLAHLGQRIG TSYYSLPDRY MCFSSVVFMH GKFFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-11B3 family protein