PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002157.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 308aa    MW: 33983.8 Da    PI: 4.5104
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002157.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-072570241
                        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                    ++r+C+ ++   + l+C+ ++  lC +C  e H+       Ht+++
  FANhyb_rscf00002157.1.g00004.1 25 KKRVCDYCGVSMALLYCRADSAKLCFSCDKEVHSAnqlfvkHTRSQ 70
                                    6899*****988*********************6688999998765 PP
2zf-B_box30.76.4e-1069112341
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                                      + C+ ++e ++++fC + ++ lC++C  e H +      H+++p
  FANhyb_rscf00002157.1.g00004.1  69 SQLCDACDEAPASIFCSTESSVLCQNCDWERH-NlssatvHDRRP 112
                                     679*****************************.558888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-132471IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9932471IPR000315B-box-type zinc finger
PfamPF006431.5E-62569IPR000315B-box-type zinc finger
CDDcd000217.84E-52771No hitNo description
PROSITE profilePS5011910.77967113IPR000315B-box-type zinc finger
PfamPF006433.4E-769112IPR000315B-box-type zinc finger
CDDcd000214.04E-671100No hitNo description
SMARTSM003360.3572113IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNGFKEEEEE AGQQNMGAQK KQQKKKRVCD YCGVSMALLY CRADSAKLCF SCDKEVHSAN  60
QLFVKHTRSQ LCDACDEAPA SIFCSTESSV LCQNCDWERH NLSSATVHDR RPVEGFTGNP  120
GLNELLAFVG FENLDKKGLV FSEESSGGGG GFDGSGLDES LGLCDGFSDF LVWETPSVVS  180
LDDLIVSNPG HKFQAMGVPP LPKNRNAKCG RHKEEILSQL RVVAKSEPNL MNEDVDLNSF  240
MSFQSPETEQ HMQSGGFCTS FEQDAEPLAF PAYEAQEFEA NDCGKSSEDF FHKGLKRSYL  300
QDCSMVPD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309690.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2P6PWJ10.0A0A2P6PWJ1_ROSCH; Putative transcription factor C2C2-CO-like family
STRINGXP_004309690.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.24e-71B-box type zinc finger protein with CCT domain