PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002219.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WOX

Protein Properties

Length: 233aa MW: 26612.7 Da PI: 9.5714

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002219.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	142	202	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++qle+Le+ +++ n +p +++ +e++k+l ++te++V++WFqNrRa+ k+ FANhyb_rscf00002219.1.g00001.1 142 RQRWTPSNTQLEILERIYNEaNGTPGKHRVKEITKELsqhgQVTETNVYNWFQNRRARSKR 202 89***************99************************************97 PP
2	Wus_type_Homeobox	93.2	2.3e-30	141	204	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe++y+++ tP k+++++it+eL+++G+++++NV++WFQNr+aR+++kq FANhyb_rscf00002219.1.g00001.1 141 ARQRWTPSNTQLEILERIYNEANGTPGKHRVKEITKELSQHGQVTETNVYNWFQNRRARSKRKQ 204 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.366	138	203	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-16	138	205	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-11	140	207	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-17	140	205	IPR009057	Homeodomain-like
CDD	cd00086	1.79E-12	142	204	No hit	No description
Pfam	PF00046	2.8E-17	142	202	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEGQRKVLAV KERLRTQNPD GFCVMTDDQV EQLQKQIAVY AVICEQLVDM HKAFTAQQDL 60 AGSSLNLQFS ITLPFIMQKL YDTTSLGPCF FRAILFYSLH LLTMKFLLNI LPISISLSGP 120 GMKMGNVYGD LMPFGGNKVT ARQRWTPSNT QLEILERIYN EANGTPGKHR VKEITKELSQ 180 HGQVTETNVY NWFQNRRARS KRKQSVPTRN ITESDIEPEV ISPKDKKTKP EDM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	203	RRARSKRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300539.1	2e-76	PREDICTED: WUSCHEL-related homeobox 8-like
TrEMBL	A0A2P6PBJ9	6e-69	A0A2P6PBJ9_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004300839.1	2e-94	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-35	WUSCHEL related homeobox 13