PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002493.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 480aa    MW: 55084.5 Da    PI: 8.7539
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002493.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.43.2e-122493887
                        trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                    + e g++rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+lea
  FANhyb_rscf00002493.1.g00001.1  2 LGELGYKRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFDELEA 49
                                    5689****************************95..55568******985 PP
2trihelix1032.2e-32317402187
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+k ev+aLi++r++++ +++++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tc
  FANhyb_rscf00002493.1.g00001.1 317 RWPKTEVQALIDLRTSLDVKYQDAGPKGSLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTC 394
                                     8********************************************************************97.99***** PP

                        trihelix  80 pyfdqlea 87 
                                     pyf+qlea
  FANhyb_rscf00002493.1.g00001.1 395 PYFHQLEA 402
                                     ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-7349No hitNo description
SMARTSM007174.1E-4314376IPR001005SANT/Myb domain
PfamPF138372.6E-22316403No hitNo description
PROSITE profilePS500907.584316374IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4316373IPR009057Homeodomain-like
CDDcd122033.05E-27316381No hitNo description
SuperFamilySSF466896.08E-5317414IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
KLGELGYKRS AKKCKEKFEN VYKYHRRTKE GRSGKPEGKT YRFFDELEAF DHQQNSHNLS  60
IIPPKPPVML WTNNSNHHPN QSVPPPVVTV PQNGVTPATD PIIHSSTNNS LLPQQINSSQ  120
DNTNGFRLLN PTTNLFSSST SSTTASDEEF QQRNKRKRKW KYFFRRLTKQ VLEKQERLQE  180
NFLEAIAKCD QERMVKEEAW RMQEMARIDR DHEVLVQERS SAAAKDAALI QFLQKVSLQH  240
NSNDTRSLEI NDAAAMLVIP PPTNVPRPPL PALPVSWAID QRGLTASSDG AVTPRNLEAK  300
KVYGNGENNS AVMGSSRWPK TEVQALIDLR TSLDVKYQDA GPKGSLWEEI SAGMRRLGYN  360
RSSKRCKEKW ENINKYFKKV KESSKTRPED SKTCPYFHQL EALYRNKNNN KIEYHKDRSV  420
EKLQIVQQPL RENVDPNLEE HEHDDHGDQD GESTEEDQEH DQIGGIVTSY KQSSMEMVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1715KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290519.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-108TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2H4NFW40.0A0A2H4NFW4_FRAAN; Trihelix transcription factor GT-2A
STRINGXP_004290519.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-102Trihelix family protein