PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002559.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 780aa    MW: 85505.1 Da    PI: 6.2507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002559.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.52.6e-1004167792374
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                      ++L+++Ae+v +g+++ aqa+Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + +  + pp++ ++ +++ ++ a
  FANhyb_rscf00002559.1.g00001.1 416 LDQLYKAAEMVGTGNFSHAQAILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDVIFKMGA 492
                                     679**************************************************955554..57888999999******* PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskee 157
                                     +k+fsevsP+++f ++t+Nqa+leav++++++Hi+Dfdi+ G++W++++q+L  R+  + +psl+iT+++sp+++++ e
  FANhyb_rscf00002559.1.g00001.1 493 YKVFSEVSPLIQFVNFTCNQALLEAVSEADQIHIVDFDIGFGAHWASFMQELPLRNrgGTSPSLKITAFASPSTHHTVE 571
                                     *****************************************************99976779****************** PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                     l+ ++++L++fA+e+g+ fe +v+  + l d +  +L   r + +Ea+aVn+ +   +  +++++l++    +L++vk+
  FANhyb_rscf00002559.1.g00001.1 572 LSLMRDNLTQFADEIGLGFELEVVNID-LLDQNSFSLpffRANDNEAVAVNFPI--WSSSNQPAALPN----LLRFVKQ 643
                                     ***********************7444.3333444442226666********99..555667888888....******* PP

                            GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                                     lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k+Er+ll+++i++ v  + +       +l
  FANhyb_rscf00002559.1.g00001.1 644 LSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLLQPKIESTVLGRLRT----PDKL 717
                                     **************************************665.579********************998888....999* PP

                            GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                       W+  + +aGF+p+++s+++++qa++++++   +g++ve++++slvl+W++r+L+s+SaWr
  FANhyb_rscf00002559.1.g00001.1 718 PLWKTLFASAGFTPLSFSNFTETQAECVVKRSTARGFHVEKRQESLVLCWQRRELISASAWR 779
                                     *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.636389759IPR005202Transcription factor GRAS
PfamPF035148.8E-98416779IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MPFQFQQQGK GVFEITAPSV CDWNHKKEEE LFINNSFVSN EPTSVLHMRR SPSPPTSAST  60
LSSSFNGGGG GNTTPLLQET SPVGPEPDTA AARSSKDEWA CELQSIPSGG LEAVTGSGGE  120
RCGGLGLEDW ETMLSETAAS PGQDHSLLRW ISGDVDDASF GLKQLLQSGN NSHSLELDGN  180
VGLGIVDQGS GFDHIGSSVS GPNLGFSGGS GFNGGNGRLG FVSGTSGPLN YKVSNVGMVN  240
NNGASSNPIF TNSTLPVSLP HGMVYQNHQQ FENPDEKPQI LNPQLFMNQH QSQLPHQNPN  300
FFMPVTYAQQ EQHFLQSQPK RHNPGGGGGL DPSSQIHQKV QYSDPGHEFL LRKQHLQQQP  360
QPHFGNFPPG MQFLPQQHHT QPRPVVVPKQ KVDGEEMAAA VALQNQQQQL LQHSLLDQLY  420
KAAEMVGTGN FSHAQAILAR LNHQLSPVGK PLQRAAFYFK EALQLLLLMN NPATSPPPRT  480
PTPFDVIFKM GAYKVFSEVS PLIQFVNFTC NQALLEAVSE ADQIHIVDFD IGFGAHWASF  540
MQELPLRNRG GTSPSLKITA FASPSTHHTV ELSLMRDNLT QFADEIGLGF ELEVVNIDLL  600
DQNSFSLPFF RANDNEAVAV NFPIWSSSNQ PAALPNLLRF VKQLSPKIVV SLDRGCDRSD  660
LPFPQHILQA LQSYINLLES LDAVNVTSDA VNKIERFLLQ PKIESTVLGR LRTPDKLPLW  720
KTLFASAGFT PLSFSNFTET QAECVVKRST ARGFHVEKRQ ESLVLCWQRR ELISASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3043477922375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298643.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2P6P8C70.0A0A2P6P8C7_ROSCH; Putative transcription factor GRAS family
STRINGXP_004298643.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-115GRAS family protein