PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002566.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 233aa MW: 26165.5 Da PI: 8.9303

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002566.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.4	1.6e-22	20	67	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +n qvtfskRr g++KKA+EL++LC++eva+i+fs+ +k y + FANhyb_rscf00002566.1.g00002.1 20 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPANKPYSF 67 577899*************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-31	11	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.773	11	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.72E-27	12	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.12E-33	12	80	No hit	No description
PRINTS	PR00404	7.2E-18	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-25	20	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-18	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-18	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009559	Biological Process	embryo sac central cell differentiation
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTMKKSNRSS QGRQKIPIAK IAKRTNLQVT FSKRRSGLFK KASELCTLCG VEVAIIVFSP 60 ANKPYSFGHP DVDSLIDRFL ARNPNFNMSL ADSCQQLGEA HKKATAHELN MQLTRISNQV 120 ETERKLGESL DKMSKASECW WENPVDELGL DELRILQAAL EELKKNVNEQ TNRIWMESSN 180 TTSIANNSSS FFMTNNGHHL SKNSSPRSDQ VGSDYNDIPR AYDFGFAGNI GLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3kov_B	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3kov_I	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3kov_J	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_A	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_B	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_C	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_D	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_I	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
3p57_J	4e-15	12	83	1	72	Myocyte-specific enhancer factor 2A
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292056.1	1e-169	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	1e-55	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A2P6PJW3	1e-147	A0A2P6PJW3_ROSCH; Putative transcription factor MADS-type1 family
STRING	XP_004292056.1	1e-169	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-57	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]