PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002590.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 416aa MW: 46246.2 Da PI: 6.186

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002590.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.3e-08	341	381	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L FANhyb_rscf00002590.1.g00001.1 341 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 381 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.212	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-13	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.86E-14	338	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-12	340	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-5	341	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.87E-5	354	386	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDSFAWDSSH IITYTSTLWN NHHHQHDLDQ ESLLMSSNSS STVLNIPIQD HQLQQVQESH 60 ILMNSNNQSP ASNTEMAQQH WGGKSLAAEQ LCQVPFIISR PFPMNSLINS AFMVDDHHQN 120 KARPAATATC SIESLDCLFS AATNSNTAED TTSLDQDDAI NSTIAPNCRR SNLWNFGTVS 180 TTTAVSSESE TTNNASRPNK ETQSFSKRCR NDDQSDQLKF YAENYSQQFD LLQTDSSTTT 240 TEGGGFRLIS ENPPKAKKLK SSSDQKSTTP STTNINFQQP TSSSLSGSST DQEPDPEVIA 300 QMKEMIYRAA AFRPVNLGIE MVERPKRKNV KISSDPQTVA ARQRRERISE RIRVLQKLVP 360 GGSKMDTASM LDEAANYLKF LRSQVKALEN LGQKIDSMSN YLPPASFAFS FNPPFP

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDSFAWDSSH IITYTSTLWN NHHHQHDLDQ ESLLMSSNSS STVLNIPIQD HQLQQVQESH  60
ILMNSNNQSP ASNTEMAQQH WGGKSLAAEQ LCQVPFIISR PFPMNSLINS AFMVDDHHQN  120
KARPAATATC SIESLDCLFS AATNSNTAED TTSLDQDDAI NSTIAPNCRR SNLWNFGTVS  180
TTTAVSSESE TTNNASRPNK ETQSFSKRCR NDDQSDQLKF YAENYSQQFD LLQTDSSTTT  240
TEGGGFRLIS ENPPKAKKLK SSSDQKSTTP STTNINFQQP TSSSLSGSST DQEPDPEVIA  300
QMKEMIYRAA AFRPVNLGIE MVERPKRKNV KISSDPQTVA ARQRRERISE RIRVLQKLVP  360
GGSKMDTASM LDEAANYLKF LRSQVKALEN LGQKIDSMSN YLPPASFAFS FNPPFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	346	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463350.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	3e-71	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2P6RXS0	0.0	A0A2P6RXS0_ROSCH; Putative transcription factor bHLH family
STRING	XP_004297624.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-58	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]