PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002603.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 215aa MW: 23064.4 Da PI: 8.1951

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002603.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+P+Ggg+rk+ k+s FANhyb_rscf00002603.1.g00001.1 16 EQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPIGGGSRKSTKRS 76 57899***************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	11	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.05	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MQDPTTFQPI KPQFPEQEQL KCPRCDSSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGSL 60 RNIPIGGGSR KSTKRSSSGS KRSSSSATNS SSSTLSSSAA AAAAGAQNQM GQKIDQENPM 120 VGISGSFSSM LTSNDQFGSL MEGLNPNGPG LKLMQMGDFG ENVVDSSGHG LNLDPGLEVQ 180 SNGNPESYMS LQNGDWNGSS GWPDLAIYTP GSSFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297611.1	1e-157	PREDICTED: dof zinc finger protein DOF1.7-like
Swissprot	O82155	5e-45	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2P6RXV2	1e-106	A0A2P6RXV2_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004297611.1	1e-157	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-35	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]