PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002639.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 690aa MW: 74962.3 Da PI: 6.6174

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002639.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	4e-30	313	372	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg Hnh+ FANhyb_rscf00002639.1.g00001.1 313 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCADDMSILITTYEGAHNHP 372 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	298	374	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-27	306	374	IPR003657	WRKY domain
PROSITE profile	PS50811	28.346	308	374	IPR003657	WRKY domain
SMART	SM00774	1.1E-36	313	373	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	314	372	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MEAAAVEKPY HGDQEQEEKR VVLLESSTTA AHDEHREAHG KEESVLKAGT ERAGAGQQEN 60 NERKSSSPRM KKSEFREAEE DNIMKTTAER ELFHNDISTT SNIKGSSLAE PDHSVASTSS 120 SRKEQDYQLE SARAEMGEVR EENQRLKKYL DRMMEDYQTL QMQYHDIQQK ATESSNDAVV 180 TNNHQDDDES EQLSLSLGSF SGKRKRVEEK SKSPSTQAGK EKETDDEKSL SLGLDCKYEA 240 PAKSSSTTTD QVPLSNPSPA SSVEEVPKEE AGETWPPKKV LKTMRSIEDE VAQQSPVKKA 300 RVSVRARCDT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT IAPSCPVRKQ VQRCADDMSI 360 LITTYEGAHN HPLPMSATAM ASTTSAAASM LLSGSSSSSS RPGLNPSVGA TTAAAELHGY 420 NYYVSDNSRS RFYVPNSSMS SSQPTITLDL TSNPSSSSSS HMNKFASSTL NSAHQVLYPP 480 TSLNFGSSDQ SNNIMSWNNN GFLSYGNGTQ LPYNNKNTIL GRQQQQQPMQ NSMYQNYMQK 540 NNPTPLQFQL PDPIAAATKA ITADPSFQSA LAAALTSIIG SSSNGGSGSN NNNQNAGGDH 600 FNNIMAQKLK WGENFPGISS SNSATASSYL QTAIKGGNIT GCGSSYLSKP NSSSAIISQP 660 GSLMFLQPPN SLPFATHKSA STSPSEDHKS

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MEAAAVEKPY HGDQEQEEKR VVLLESSTTA AHDEHREAHG KEESVLKAGT ERAGAGQQEN  60
NERKSSSPRM KKSEFREAEE DNIMKTTAER ELFHNDISTT SNIKGSSLAE PDHSVASTSS  120
SRKEQDYQLE SARAEMGEVR EENQRLKKYL DRMMEDYQTL QMQYHDIQQK ATESSNDAVV  180
TNNHQDDDES EQLSLSLGSF SGKRKRVEEK SKSPSTQAGK EKETDDEKSL SLGLDCKYEA  240
PAKSSSTTTD QVPLSNPSPA SSVEEVPKEE AGETWPPKKV LKTMRSIEDE VAQQSPVKKA  300
RVSVRARCDT PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT IAPSCPVRKQ VQRCADDMSI  360
LITTYEGAHN HPLPMSATAM ASTTSAAASM LLSGSSSSSS RPGLNPSVGA TTAAAELHGY  420
NYYVSDNSRS RFYVPNSSMS SSQPTITLDL TSNPSSSSSS HMNKFASSTL NSAHQVLYPP  480
TSLNFGSSDQ SNNIMSWNNN GFLSYGNGTQ LPYNNKNTIL GRQQQQQPMQ NSMYQNYMQK  540
NNPTPLQFQL PDPIAAATKA ITADPSFQSA LAAALTSIIG SSSNGGSGSN NNNQNAGGDH  600
FNNIMAQKLK WGENFPGISS SNSATASSYL QTAIKGGNIT GCGSSYLSKP NSSSAIISQP  660
GSLMFLQPPN SLPFATHKSA STSPSEDHKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	300	374	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299392.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-130	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2P6P2H0	0.0	A0A2P6P2H0_ROSCH; Putative transcription factor WRKY family
STRING	XP_004299392.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-71	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]