PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002690.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 469aa MW: 53175.7 Da PI: 7.2821

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002690.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.6	1.2e-49	35	160	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+s FANhyb_rscf00002690.1.g00001.1 35 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTS 112 79*************************.89***********888889********************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl FANhyb_rscf00002690.1.g00001.1 113 GYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160 ********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.552	34	181	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-55	34	181	IPR003441	NAC domain
Pfam	PF02365	2.2E-24	36	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MAIAATRMSH EEDESNKQHH EVEVDHDEHE HDMVMPGFRF HPTEEELIEF YLRRKVEGKR 60 FNVELITFLD LYRYDPWELP AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA 120 DRMIRSENFR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PHHETERYQK GEISLCRVYK 180 RPGVEDHPSL PRSLPSSRAA AANANGASTS RSLLQAQSSS SSSLNKKQHS INSSLMEKLQ 240 ANFNFNGGSS SLGQSVQQLH HHHHQDQVAA DPKINETEGS SGNSDVTSTL GVGLRSSATN 300 IPIHHPSSPL GLQPHHHHHG GVLHLDDHHA EQEGISTFLQ QHHHHSKPQT LLFAGSSVSA 360 TSNVIDDLQR LLNYQQQQAV SNIANQQQAL HVQQYYDAHS HNHNHNQQLP SNVVNHFSSP 420 FPLVPPPPSQ SQLSPNGLQV TAFSDRLWDW NPISEPNRAP DQYNTNPFK

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MAIAATRMSH EEDESNKQHH EVEVDHDEHE HDMVMPGFRF HPTEEELIEF YLRRKVEGKR  60
FNVELITFLD LYRYDPWELP AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA  120
DRMIRSENFR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PHHETERYQK GEISLCRVYK  180
RPGVEDHPSL PRSLPSSRAA AANANGASTS RSLLQAQSSS SSSLNKKQHS INSSLMEKLQ  240
ANFNFNGGSS SLGQSVQQLH HHHHQDQVAA DPKINETEGS SGNSDVTSTL GVGLRSSATN  300
IPIHHPSSPL GLQPHHHHHG GVLHLDDHHA EQEGISTFLQ QHHHHSKPQT LLFAGSSVSA  360
TSNVIDDLQR LLNYQQQQAV SNIANQQQAL HVQQYYDAHS HNHNHNQQLP SNVVNHFSSP  420
FPLVPPPPSQ SQLSPNGLQV TAFSDRLWDW NPISEPNRAP DQYNTNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	36	181	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	36	181	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	36	181	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	36	181	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	36	181	22	168	NAC domain-containing protein 19
3swm_B	1e-54	36	181	22	168	NAC domain-containing protein 19
3swm_C	1e-54	36	181	22	168	NAC domain-containing protein 19
3swm_D	1e-54	36	181	22	168	NAC domain-containing protein 19
3swp_A	1e-54	36	181	22	168	NAC domain-containing protein 19
3swp_B	1e-54	36	181	22	168	NAC domain-containing protein 19
3swp_C	1e-54	36	181	22	168	NAC domain-containing protein 19
3swp_D	1e-54	36	181	22	168	NAC domain-containing protein 19
4dul_A	1e-54	36	181	19	165	NAC domain-containing protein 19
4dul_B	1e-54	36	181	19	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301581.1	0.0	PREDICTED: NAC domain-containing protein 48
TrEMBL	A0A2P6PCA8	0.0	A0A2P6PCA8_ROSCH; Putative transcription factor NAM family
STRING	XP_004301581.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-107	NAC domain containing protein 35