PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00002925.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 261aa MW: 28935.9 Da PI: 8.8709

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00002925.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.5e-12	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+P++ K++Ka+ L +++ +k+L FANhyb_rscf00002925.1.g00001.1 70 KSHSQAEKRRRDRINAQLATLRKLIPQS-----DKMDKAALLGSVIDEVKDL 116 79***********************8.....7*********9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.932	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	68	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-10	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.46E-10	70	118	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.1E-14	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-10	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.20E-4	167	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MENCYYAEGP NWVNQYQTAA AVSNESSSFQ VPWPNVSNST PFQFCGGFPP SWSSTAEGLA 60 EEDRAASASK SHSQAEKRRR DRINAQLATL RKLIPQSDKM DKAALLGSVI DEVKDLKRRA 120 NEVSKALMVP TEFDDVTVSQ CDLVHEGTPT NSTSINKNKD NSIMIRVSVC CDDQPELFRE 180 LIQVLKRLKL TAMKADIASA GGRIKSILVL CSNDSEETVS ISNLKQALKL VLSKIAASSA 240 TPNCRIRSKR QRFFLPFQYP K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307674.1	0.0	PREDICTED: transcription factor bHLH51
TrEMBL	A0A2P6SLC6	1e-165	A0A2P6SLC6_ROSCH; Putative transcription factor bHLH family
STRING	XP_004307674.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-49	bHLH family protein