PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002960.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 125aa    MW: 13605.3 Da    PI: 10.0614
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002960.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63.1e-1771106134
                            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                     Cs  nC+++ Tp+WR gp g+k+LCnaCG++yrk +
  FANhyb_rscf00002960.1.g00001.1  71 CSnfNCRASATPMWRTGPLGPKSLCNACGIKYRKLK 106
                                     55559****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-1265110No hitNo description
Gene3DG3DSA:3.30.50.106.8E-1366108IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.6E-1067121IPR000679Zinc finger, GATA-type
PfamPF003203.7E-1571107IPR000679Zinc finger, GATA-type
CDDcd002027.20E-874104No hitNo description
PROSITE profilePS5011410.56775103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
GFGYGASAGR AHAEEHSATM NLMDFQRSIK EYCLLTVSIT QGKVGGSKKR KTPHSDERPV  60
VPRPEDQNRT CSNFNCRASA TPMWRTGPLG PKSLCNACGI KYRKLKLKEK QREEGASGEG  120
SSSAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461845.19e-71PREDICTED: GATA transcription factor 20-like
TrEMBLA0A314Z6006e-25A0A314Z600_PRUYE; GATA transcription factor 18
STRINGXP_004296301.17e-60(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-13GATA transcription factor 29