PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002964.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 128aa    MW: 14824.9 Da    PI: 9.0465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002964.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071457344
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                     WT+   +l+ +a + +  +   +W++Ia+ +g g t++++k  +
  FANhyb_rscf00002964.1.g00001.1 14 TWTAKQTKLFENALAIYDQEtndRWHKIAKIVG-GTTEEEVKRQY 57
                                    7*****************99*************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3661065IPR017884SANT domain
SMARTSM007171.5E-71163IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-101369IPR009057Homeodomain-like
PfamPF002491.6E-51457IPR001005SANT/Myb domain
CDDcd001672.53E-61457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVSNKLSYPD SSSTWTAKQT KLFENALAIY DQETNDRWHK IAKIVGGTTE EEVKRQYEIL  60
VHDINCIESG KVPLPKYRKV GESNISNQEK RTLLTPCSYP NWAEEFKAIK TPSGIRLSTN  120
FLMKWIYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-261191786RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462882.14e-61PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB81e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A251NEW73e-44A0A251NEW7_PRUPE; Uncharacterized protein
STRINGXP_004287896.13e-60(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]