PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003024.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 470aa MW: 51944.1 Da PI: 9.1763

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003024.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	53	73	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H FANhyb_rscf00003024.1.g00001.1 53 CEICGKGFQRDQNLQLHRRGH 73 *******************88 PP
2	zf-C2H2	13.5	0.00022	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ FANhyb_rscf00003024.1.g00001.1 127 WKCEKCSKRYAVQSDWKAHSKTC 149 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.1E-5	50	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.87E-6	50	73	No hit	No description
SMART	SM00355	0.076	51	73	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	51	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	53	73	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-4	115	148	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.87E-6	122	147	No hit	No description
SMART	SM00355	130	127	147	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MGFFKIQTQL LYLDPILLLS KRRETSQETQ ANPEAEVIAL SPKTLMATNR FLCEICGKGF 60 QRDQNLQLHR RGHNLPWKLK QRTSKEPRKR VYVCPEKTCV HHHASRALGD LTGIKKHFCR 120 KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE 180 ETARVNAVSN IHNNAMPSNI NYHHYMGNNA SSLLLGPPNM SQLQFSSIFK PISSNDTPDA 240 MSQTSRSLSL WMGQGSNGTQ EEMTANNQHH QHQLGSVSSS AGSIFGDPNN ISVSCSEPPP 300 PSDHYQLNWV LGSNNKLSPS NNAHHQDQLT ITSMSSAANS LPSLYTHQTP SANMSATALL 360 QKAAQIGATS TDKTSLLGSF GLKSNNNNST SSASHQAVTQ VQDGSKVCGL YGTAEDQGAH 420 DHHLLQHMHQ AKRRHIQSEE GAGGGQTRDF LGVGVQTICH SSPINGYWRV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MGFFKIQTQL LYLDPILLLS KRRETSQETQ ANPEAEVIAL SPKTLMATNR FLCEICGKGF  60
QRDQNLQLHR RGHNLPWKLK QRTSKEPRKR VYVCPEKTCV HHHASRALGD LTGIKKHFCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE  180
ETARVNAVSN IHNNAMPSNI NYHHYMGNNA SSLLLGPPNM SQLQFSSIFK PISSNDTPDA  240
MSQTSRSLSL WMGQGSNGTQ EEMTANNQHH QHQLGSVSSS AGSIFGDPNN ISVSCSEPPP  300
PSDHYQLNWV LGSNNKLSPS NNAHHQDQLT ITSMSSAANS LPSLYTHQTP SANMSATALL  360
QKAAQIGATS TDKTSLLGSF GLKSNNNNST SSASHQAVTQ VQDGSKVCGL YGTAEDQGAH  420
DHHLLQHMHQ AKRRHIQSEE GAGGGQTRDF LGVGVQTICH SSPINGYWRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-37	123	190	3	70	Zinc finger protein JACKDAW
5b3h_F	1e-37	123	190	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303130.1	0.0	PREDICTED: zinc finger protein NUTCRACKER
Swissprot	Q9ZWA6	1e-136	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2P6RUB3	0.0	A0A2P6RUB3_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004303130.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4626	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-137	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]