PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003025.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 171aa    MW: 19905.5 Da    PI: 4.5625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003025.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1722108599
                                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                     l  +d+++   +++pkkf+ ++g++   s   +l+ +sg +W+v+l  +++ g+++++kGW eF k   L+ gDf+vF+
  FANhyb_rscf00003025.1.g00001.1  22 L--EDTSRDIKIRIPKKFVMKYGQD--ISNSARLKLPSGAEWQVEL--TRCNGKVWFEKGWLEFSKFFSLDYGDFLVFQ 94 
                                     4..788888899**********977..6778***************..******************************* PP

                                     E-SSSEE..EEEEE-S CS
                              B3  84 ldgrsefelvvkvfrk 99 
                                      +g+s f   v +f++
  FANhyb_rscf00003025.1.g00001.1  95 CEGNSVF--QVCIFDR 108
                                     9999999..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-249109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-2310108IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-1915107No hitNo description
PROSITE profilePS5086312.88716109IPR003340B3 DNA binding domain
SMARTSM010191.9E-1317109IPR003340B3 DNA binding domain
PfamPF023622.0E-1423108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGSLRKHQTF SSTTPQFFQI ILEDTSRDIK IRIPKKFVMK YGQDISNSAR LKLPSGAEWQ  60
VELTRCNGKV WFEKGWLEFS KFFSLDYGDF LVFQCEGNSV FQVCIFDRTA TEIDYHIAMP  120
GMEETDHEDE EDDDICIEIL EDSQPVPRPE VKREKSPLPS SIIQKNENKL E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305403.11e-102PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_011466836.11e-103PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2P6RVX88e-84A0A2P6RVX8_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004305403.11e-102(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein