PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003095.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 141aa    MW: 15984.2 Da    PI: 9.7386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003095.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-074391447
                                    S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                    +  eE e l+ +v+++G g+Wk I +        ++R+   +k +w+ +
  FANhyb_rscf00003095.1.g00001.1 43 FRSEEAEALLAGVAKHGVGNWKIILEDSEfgsilTRRSNMKLKYKWRHW 91
                                    568************************9999**9999999999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00353994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-84393IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1043102IPR009057Homeodomain-like
CDDcd116606.26E-134389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MLLRSERKLL MFSATRLLPS RVQHSIASPS STMLVLLSHN PVFRSEEAEA LLAGVAKHGV  60
GNWKIILEDS EFGSILTRRS NMKLKYKWRH WSRRPSVNSP SMADEALEEA GSVSDTKEED  120
RDSETKKRKR MPAEDTEPST C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024177942.11e-34single myb histone 4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3455222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-14MYB_related family protein