PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003249.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23042.5 Da    PI: 8.5788
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003249.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.4e-251462149
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                    krien+sn+qvtfskRr+g++KKA ELSvLC+a  avi+fss +k++ y
  FANhyb_rscf00003249.1.g00002.1 14 KRIENTSNKQVTFSKRRAGLFKKAGELSVLCGAHMAVIVFSSANKVFCY 62
                                    79*******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.684666IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-34665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-28776IPR002100Transcription factor, MADS-box
CDDcd002654.12E-37777No hitNo description
PRINTSPR004045.4E-23828IPR002100Transcription factor, MADS-box
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PfamPF003196.4E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-232843IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-234364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLKKTQGRKK IEIKRIENTS NKQVTFSKRR AGLFKKAGEL SVLCGAHMAV IVFSSANKVF  60
CYGHPDIHAV IESYQNGLSS VVGADDKAQE VVIAEYNKLC DEKHKEEEEL KKKMAEAKAE  120
AIEKKTMMEM GMSGDQVLNE GFWWDEPVDL VRLEERERQK YMMALETLRN KVADRAHHKK  180
IMSGNCCRDI TSSCSSTSYD GTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-19774269Myocyte-specific enhancer factor 2B
1tqe_Q6e-19774269Myocyte-specific enhancer factor 2B
1tqe_R6e-19774269Myocyte-specific enhancer factor 2B
1tqe_S6e-19774269Myocyte-specific enhancer factor 2B
3mu6_A5e-19774168Myocyte-specific enhancer factor 2A
3mu6_B5e-19774168Myocyte-specific enhancer factor 2A
3mu6_C5e-19774168Myocyte-specific enhancer factor 2A
3mu6_D5e-19774168Myocyte-specific enhancer factor 2A
6c9l_A6e-19774269Myocyte-specific enhancer factor 2B
6c9l_B6e-19774269Myocyte-specific enhancer factor 2B
6c9l_C6e-19774269Myocyte-specific enhancer factor 2B
6c9l_D6e-19774269Myocyte-specific enhancer factor 2B
6c9l_E6e-19774269Myocyte-specific enhancer factor 2B
6c9l_F6e-19774269Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293224.11e-116PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6PYJ05e-96A0A2P6PYJ0_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004293224.11e-115(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-27AGAMOUS-like 62