PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003261.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 351aa    MW: 38463.9 Da    PI: 9.9855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003261.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-14122166347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  FANhyb_rscf00003261.1.g00001.1 122 PWTEEEHRIFLMGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 166
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.895115171IPR017930Myb domain
SuperFamilySSF466892.84E-17117171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-18118170IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-11119165IPR009057Homeodomain-like
SMARTSM007173.3E-11119169IPR001005SANT/Myb domain
PfamPF002491.6E-11122166IPR001005SANT/Myb domain
CDDcd001679.17E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTN FRGSSAAGFV GTTPPHGFRL FGVQVHHHDQ VSSSVSSFNA  60
MNMMMKKSFS MDCLPTSSAS SSSPSSSRIS IDNEHSDHHK APIGYLSDGL ICRAQDRKKG  120
VPWTEEEHRI FLMGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ATLTKKKRRS  180
SLFDMFGSNS SDPQSKPSST VDPAQCVNSN IPSSPQRQSN IIQLQLSTTN TSASHNLKLS  240
YHHQQKPADY SSSTPPLGSS HDRDRDRVRD RTMPGWIYGL IDSQLKYSNA VFSSSEPSNI  300
PLPPSSSVVP DHLELTLASP VRPLDLDQNR LSSSSSPTSG PLHNTGPISV T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287537.10.0PREDICTED: protein REVEILLE 5-like
TrEMBLA0A2P6RK610.0A0A2P6RK61_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004287537.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-56MYB_related family protein