PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003279.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 79aa    MW: 9347.75 Da    PI: 7.611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003279.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.7e-12242451
                             AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                                    +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  FANhyb_rscf00003279.1.g00001.1  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 42
                                    9**98..47*********4.....5********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0012259IPR001471AP2/ERF domain
PfamPF008474.5E-6244IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-8245IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-7352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGSQ EEAAHLYDRA AFMCGREPNF ELPEEEMQEL  60
MKFKWDEFLA VTRHSINNK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290181.12e-52PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024163499.13e-52ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_024163500.13e-52ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-38ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A3S8T9624e-51A0A3S8T962_FRAAN; Transcription factor Soloist
STRINGXP_004290181.19e-52(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.23e-41ERF family protein