PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003340.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 522aa    MW: 58675.9 Da    PI: 7.018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003340.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-173784148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+ Ed +l ++v ++G g+W+++ r  g++R++k+c++rw ++l
  FANhyb_rscf00003340.1.g00001.1 37 KGPWTAVEDRILMEYVSKHGEGNWNAVQRNSGLKRCGKSCRLRWANHL 84
                                    79******************************************9986 PP
2Myb_DNA-binding51.32.8e-1690133146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     +g +T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++
  FANhyb_rscf00003340.1.g00001.1  90 KGQFTPEEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 133
                                     799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9393284IPR017930Myb domain
SuperFamilySSF466894.31E-3133131IPR009057Homeodomain-like
SMARTSM007171.6E-143686IPR001005SANT/Myb domain
PfamPF002498.3E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-233891IPR009057Homeodomain-like
CDDcd001675.64E-113984No hitNo description
PROSITE profilePS5129425.99485139IPR017930Myb domain
SMARTSM007171.4E-1689137IPR001005SANT/Myb domain
PfamPF002491.6E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2692139IPR009057Homeodomain-like
CDDcd001678.79E-1393133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MAYNGNNDIN GNALYSEGIP SELSCGLMEG NNMGLKKGPW TAVEDRILME YVSKHGEGNW  60
NAVQRNSGLK RCGKSCRLRW ANHLRPNLKK GQFTPEEERL ILELHAKYGN KWARMASQLP  120
GRTDNEIKNY WNTRVKKRLR KGLPLYPQDI NPSKRVCHSY SHSYDENTMS IPTGLKQLVT  180
STMPQTDTNF SFQSHPSSSQ NQTQLPPRPS QNQHNSTFNH SLPLYDPTTS MPSFNFHHPA  240
QMLGTPLGYK RYQEDIGFSP PISPTRQRNS SILRTTSMPD IASYQQFATG TNSMSDIFSF  300
QFQPQTQTPQ LPSSQASHTR SLSDITTTSH ANFINATHSS DGFLEQLLQE AERFGYGSHP  360
IRKQIGGQLD SSDHEKSYAF DGYGHSLAST AMDSSLLEMK PTQDHQQMNS IPKYLAKLFS  420
FNSSTELVPN SNDGESTELP NSSSLEMKPT HQDHDDEHIN SIPKYLAKLF SFNLSTDQAV  480
PNSYNGESTK LPNSQTSEVT EGSHLEFDMQ QHMDSFFPAA NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30351395108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139RVKKRLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461045.10.0PREDICTED: transcription factor MYB29-like
TrEMBLA0A2P6QCG91e-125A0A2P6QCG9_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBLA0A498INQ01e-124A0A498INQ0_MALDO; Uncharacterized protein
STRINGXP_004295832.11e-135(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-69myb domain protein 101