PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003403.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HSF

Protein Properties

Length: 372aa MW: 41609.6 Da PI: 6.7086

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003403.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.4	6.3e-35	9	99	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl k+y++++d++++e++sws+n +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ we FANhyb_rscf00003403.1.g00002.1 9 FLLKTYDMVDDSATDEIVSWSSNRKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WE 78 9**************************************************************999......... PP EEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkk 101 F++++F +++k+ll++i+r+k FANhyb_rscf00003403.1.g00002.1 79 FANEEFIQDQKHLLKNIHRRK 99 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.9E-60	5	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.0E-37	5	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.31E-35	5	98	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.4E-19	9	32	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-30	9	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.4E-19	47	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	48	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.4E-19	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
GGGGGPAPFL LKTYDMVDDS ATDEIVSWSS NRKSFVVWNP PEFARLLLPT YFKHNNFSSF 60 IRQLNTYGFR KIDPERWEFA NEEFIQDQKH LLKNIHRRKP IHSHSNPQGS MVDQERAALD 120 DEIEKLSNEK AALEENISRQ KNLHTFLDKA VQNPAFVEHL ARKIESMDFS AYNKKRRLPV 180 AEHSQPVVEN SFMDNQSSSR PEFGNIFHQD FSSKLRLELS PTVSDINPVS RSTQSSNEDG 240 DSSTRKISED LKGAQMRTEG LLFANEPLEL SDTGTSFAFK MDSVSRKSAC GGSPGLHSLQ 300 PGLPSNEDSD GLIACHLNLT LSSSPLKVIS IPHSATVPLI GQDICNSPSS GLKFPQKRPQ 360 NTVKGMHLFQ LE

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

GGGGGPAPFL LKTYDMVDDS ATDEIVSWSS NRKSFVVWNP PEFARLLLPT YFKHNNFSSF  60
IRQLNTYGFR KIDPERWEFA NEEFIQDQKH LLKNIHRRKP IHSHSNPQGS MVDQERAALD  120
DEIEKLSNEK AALEENISRQ KNLHTFLDKA VQNPAFVEHL ARKIESMDFS AYNKKRRLPV  180
AEHSQPVVEN SFMDNQSSSR PEFGNIFHQD FSSKLRLELS PTVSDINPVS RSTQSSNEDG  240
DSSTRKISED LKGAQMRTEG LLFANEPLEL SDTGTSFAFK MDSVSRKSAC GGSPGLHSLQ  300
PGLPSNEDSD GLIACHLNLT LSSSPLKVIS IPHSATVPLI GQDICNSPSS GLKFPQKRPQ  360
NTVKGMHLFQ LE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-21	2	98	19	129	Heat shock factor protein 1
5d5v_B	9e-21	2	98	19	129	Heat shock factor protein 1
5d5v_D	9e-21	2	98	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298212.2	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-121	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1B0V8K6	0.0	A0A1B0V8K6_FRAVE; Heat shock factor A5a
STRING	XP_004298212.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-123	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]