PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003491.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

TCP

Protein Properties

Length: 351aa MW: 39151.1 Da PI: 8.9351

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003491.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.4	1.4e-39	117	239	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 a+kkdrhski T++g RdRRvRls+++a++fFdLqd LGfdk+s t+eWLl ++k ai +l +++ +++ ++ ss s FANhyb_rscf00003491.1.g00001.1 117 AVKKDRHSKIFTAQGFRDRRVRLSLNVAREFFDLQDLLGFDKASTTLEWLLGKSKNAIRDLEKSKCKNSFSS---SSTS 192 78************************************************************44433111...1111 PP TCP 81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133 + + +++ k+ ++ k+aa +a++srakarararertrekm+ FANhyb_rscf00003491.1.g00001.1 193 E-----CDGVLEDNLdKRMRKMKEAA--AIMARSSRAKARARARERTREKMCRI 239 1.....11222223324455555555..88888****************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-33	118	237	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.306	119	177	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.374	218	235	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MHSSTNNNIS CSGILYPFPP YNFPFSSSSS HNNHHPLLPQ ENTTPGGIFG LHQDQFSLVN 60 NSFLPPGPES TMLNLGGDSS NAIVPSPGDY QQHYGYDINN ISHPYFVSKD VQVPVVAVKK 120 DRHSKIFTAQ GFRDRRVRLS LNVAREFFDL QDLLGFDKAS TTLEWLLGKS KNAIRDLEKS 180 KCKNSFSSSS TSECDGVLED NLDKRMRKMK EAAAIMARSS RAKARARARE RTREKMCRIS 240 KRSPQICSHL RLFNELQPAD MNQEPGSTVL TEYHESVALK RKLKAPSGSN YPDRSLELNP 300 QRMEASSNCC SHINIQFPSV ISPNWDINGG VFTCPSICAI TANMNLNSSG F

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MHSSTNNNIS CSGILYPFPP YNFPFSSSSS HNNHHPLLPQ ENTTPGGIFG LHQDQFSLVN  60
NSFLPPGPES TMLNLGGDSS NAIVPSPGDY QQHYGYDINN ISHPYFVSKD VQVPVVAVKK  120
DRHSKIFTAQ GFRDRRVRLS LNVAREFFDL QDLLGFDKAS TTLEWLLGKS KNAIRDLEKS  180
KCKNSFSSSS TSECDGVLED NLDKRMRKMK EAAAIMARSS RAKARARARE RTREKMCRIS  240
KRSPQICSHL RLFNELQPAD MNQEPGSTVL TEYHESVALK RKLKAPSGSN YPDRSLELNP  300
QRMEASSNCC SHINIQFPSV ISPNWDINGG VFTCPSICAI TANMNLNSSG F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467828.1	1e-170	PREDICTED: transcription factor CYCLOIDEA
TrEMBL	A0A2P6SE01	1e-156	A0A2P6SE01_ROSCH; Putative transcription factor TCP family
STRING	XP_004306027.1	1e-160	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	9e-26	TCP family protein