PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003517.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 435aa MW: 50058.8 Da PI: 6.6631

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003517.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.3e-27	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 +Wt+++v++Li+a+++++e++++++ +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ FANhyb_rscf00003517.1.g00001.1 121 KWTDKMVRLLITAVSYIGEDIGSDCgggvrrkfsalQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDML 199 7********************9888999999999*************************************** PP trihelix 69 kkr.tsessstcpyfdql 85 +++ +++++++ +++d + FANhyb_rscf00003517.1.g00001.1 200 GRGtSCQVVENPALLDVI 217 *569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-24	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDGHLSQGGR IPGGGSYVGL DLQGSIRAHH QTQHPHNLQQ QQHQVSRQGS MVHPSIHEGF 60 PVKMGTMHNC DRTLSMVDYN KGEKCKNSVS DEDEPSYTEE GVDSHIEASR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED IGSDCGGGVR RKFSALQKKG KWKSVSKVMA ERGYHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ HALQEALRNR DDHDTDDLRR HHHDDLDEDD QDMETDERDD 300 FEENNVSHGD NRGMFGGLGD SVKRLRQGQG REDINFGGFM NAQDCNKSSY SHPQIAQGDI 360 NQALPDSTKA AWLQKQWIES RSVQLEEQKL QIQVEMLELE KQRLKWQKFS KKRDRELEKL 420 KMENERMKLE NERMA

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDGHLSQGGR IPGGGSYVGL DLQGSIRAHH QTQHPHNLQQ QQHQVSRQGS MVHPSIHEGF  60
PVKMGTMHNC DRTLSMVDYN KGEKCKNSVS DEDEPSYTEE GVDSHIEASR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED IGSDCGGGVR RKFSALQKKG KWKSVSKVMA ERGYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ HALQEALRNR DDHDTDDLRR HHHDDLDEDD QDMETDERDD  300
FEENNVSHGD NRGMFGGLGD SVKRLRQGQG REDINFGGFM NAQDCNKSSY SHPQIAQGDI  360
NQALPDSTKA AWLQKQWIES RSVQLEEQKL QIQVEMLELE KQRLKWQKFS KKRDRELEKL  420
KMENERMKLE NERMA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	14	GGRIPGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164957.1	0.0	uncharacterized protein LOC112172033
TrEMBL	A0A2P6PS33	0.0	A0A2P6PS33_ROSCH; Putative transcription factor Trihelix family
STRING	XP_004290521.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-165	sequence-specific DNA binding transcription factors