PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003589.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 254aa MW: 27849.5 Da PI: 7.9243

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003589.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.4e-42	63	162	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++gv FANhyb_rscf00003589.1.g00001.1 63 PCAACKLLRRRCAEECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANLRIRDPVYGCMGV 141 7**************************************************************************** PP DUF260 80 ilklqqqleqlkaelallkee 100 i++lqq++++l+ael+++++e FANhyb_rscf00003589.1.g00001.1 142 ISDLQQKVQSLQAELHAVRTE 162 **************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.794	62	163	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-42	63	160	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
PAQYMSRDSR EIIRLEEIIG KSIIRRESDI HITSAADQMV MMSRQNNSFG QLPGMTTLNT 60 ITPCAACKLL RRRCAEECPF SPYFSPHEPH KFASVHKVFG ASNVSKLLME VPENQRADAA 120 NSLVYEANLR IRDPVYGCMG VISDLQQKVQ SLQAELHAVR TEIVRYRYKE LAASQILSSR 180 DQIHPHHAAA SLVSSGMVSI AAPPQPISTS PPAVPPSSVA FSSSSSTSTS SLYTPSTNTT 240 GYSSLSSENI PYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	56	173	4	121	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	56	173	4	121	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294745.2	0.0	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	1e-69	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2P6QKN8	1e-110	A0A2P6QKN8_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004294745.1	1e-156	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-71	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]