PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003612.1.g00002.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 163aa MW: 17738.5 Da PI: 7.2748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003612.1.g00002.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF+++ ++ H ++H FANhyb_rscf00003612.1.g00002.1 23 YVCSFCSMSFPSSQSFAGHHNRH 45 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.538	23	45	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MFKKPNLGSA ESSKTIPNEQ RSYVCSFCSM SFPSSQSFAG HHNRHRLRHI DRWDFAQEDL 60 NNAGVAALPE LNDSKRPLSP AGSITSGSRH DDEHNSRAFH TFMPTEPSPA PISGFGAEPE 120 EDLASGSSTG STSSHGENPK KRKLSGLARL KTGSADDESW LKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468532.1	6e-97	PREDICTED: uncharacterized protein LOC105352667