PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003681.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 490aa    MW: 54543.6 Da    PI: 9.1693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003681.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-0692112323
                                     ETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                     C  Cgk F ++  L++H+++H
  FANhyb_rscf00003681.1.g00001.1  92 CRECGKGFQSWKALVSHMKSH 112
                                     9*******************9 PP
2zf-C2H212.50.00044399421123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++Cp+C k+F++   L  H r+H
  FANhyb_rscf00003681.1.g00001.1 399 HSCPICLKVFPTGQALGGHKRSH 421
                                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-9931No hitNo description
PROSITE profilePS501579.702931IPR007087Zinc finger, C2H2
SMARTSM003550.14931IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-61132IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-985112No hitNo description
SMARTSM003550.004190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.26190117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-492113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
PfamPF139128.9E-592113IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-7317339No hitNo description
PROSITE profilePS501579.349317344IPR007087Zinc finger, C2H2
PfamPF139121.1E-10317341IPR007087Zinc finger, C2H2
SMARTSM003550.44317339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-7394421No hitNo description
PROSITE profilePS501579.141399426IPR007087Zinc finger, C2H2
PfamPF139121.4E-11399422IPR007087Zinc finger, C2H2
SMARTSM003550.1399421IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280401421IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MEEDQEFKYF CKLCSKSFPC GRSLGGHMKS HLINNHSRDD QKFINSRVKV SSLENYTEKG  60
LESGPQAGYG LRENPRKTWR IAGSGEETSV LCRECGKGFQ SWKALVSHMK SHSNSTTNSF  120
ENEQDSWTSS KVVDSQSENE TTNTTRRRTA ASRRRRTRYV GTTATTSSSN PSVVNNNASS  180
SVTEIEQEQQ EEVAWCLMML SRDVGHWGGL NFVADHDHST SDDNSGFSDA PSSLKMNRVS  240
KIKDATFETF KVKKLRKKMS QEEVYVGVFS KSDKTKKNLI LEKTELAEAQ LGSNKFNSSN  300
KRKLQYAYDH SSKRSKYECG TCNKVYRSYQ ALGGHRASHK KIKGCFASKI ESSENTAEFD  360
TDLSTDHPVA SDHSKLSNLI HHQDVVVKAE SNSTKSKGHS CPICLKVFPT GQALGGHKRS  420
HLIVGPTESK NNQSTIVIPK PATPEVRDFL DLNLPAPVEE ESSTNHAAAA QALKPWWAGS  480
NHKPYEALVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301124.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P6P2Y60.0A0A2P6P2Y6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004301124.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-23C2H2-like zinc finger protein