PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003688.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22122.1 Da    PI: 5.0516
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003688.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.4e-24856250
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                    +ie+   rqvtfskRr+g++KKA E SvLCda+vavi+fsst+klye s
  FANhyb_rscf00003688.1.g00001.1  8 KIESLPARQVTFSKRRKGLFKKAGESSVLCDAKVAVIVFSSTDKLYELS 56
                                    7999999***************************************965 PP
2K-box45.72.8e-16861552392
                           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                     +L+ e+ +  re+Rh+ G+dLe+L++ eLq+Le+ +e +l+++ ++K++ +++qi+ l  ke++  ++++
  FANhyb_rscf00003688.1.g00001.1  86 RLNVELAEKIRELRHMEGKDLEELDIDELQRLENMIEGGLSRVVETKDQRIMSQIQALETKEQSWLKKTT 155
                                     4444444334678*************************************************98776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004045.9E-20121IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-25158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.137159IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-25273IPR002100Transcription factor, MADS-box
PfamPF003192.7E-21854IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-202136IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-203657IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.89477167IPR002487Transcription factor, K-box
PfamPF014863.7E-1281154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNEIKIEKIE SLPARQVTFS KRRKGLFKKA GESSVLCDAK VAVIVFSSTD KLYELSRSST  60
KDIIARYKQC TKDDGVEESA DECMMRLNVE LAEKIRELRH MEGKDLEELD IDELQRLENM  120
IEGGLSRVVE TKDQRIMSQI QALETKEQSW LKKTTCMATE SCTISTSCFT TGSSTSSTDD  180
SSSSENTLSL KLGLPRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460326.11e-102PREDICTED: MADS-box protein AGL24-like
TrEMBLA0A2P6PH105e-73A0A2P6PH10_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004299729.11e-72(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3459622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-40AGAMOUS-like 24