PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003746.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Whirly
Protein Properties Length: 216aa    MW: 23798.3 Da    PI: 10.0353
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003746.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.97.2e-58421761137
                          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhd 79 
                                     s+yk+kaal++ +++ptf++l++g+++++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhd
  FANhyb_rscf00003746.1.g00001.1  42 SIYKGKAALSLSPILPTFTKLETGSVVVERRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHD 120
                                     7****************************************************************************** PP

                          Whirly  80 paakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                                     p++++sn+G+vrk+l+++P++dG  +f++l+v n+l+k+ esfsvPv+ aefav++ +
  FANhyb_rscf00003746.1.g00001.1 121 PSMQSSNAGQVRKSLSIKPHADG--YFFSLTVVNNLLKTRESFSVPVTTAEFAVMKAA 176
                                     **********************5..9*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.0E-7031194IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.22E-6235195IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.2E-5643175IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
NQLSKRAASS LDAFTQSTGF STARQNFSAK GRIGNQIYAP FSIYKGKAAL SLSPILPTFT  60
KLETGSVVVE RRGSVMLKFM PAIGERKYDS EKRQLFALSA TEVGSLISLG PKDSCELFHD  120
PSMQSSNAGQ VRKSLSIKPH ADGYFFSLTV VNNLLKTRES FSVPVTTAEF AVMKAACSFA  180
LPHIIGWDRL TNKVPRGVEV QKSEMVEPQL LDEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-81311935169StWhy2
3n1i_A1e-81311935169protein StWhy2
3n1j_A1e-81311935169Protein StWhy2
3n1k_A1e-81311935169protein StWhy2
3n1l_A1e-81311935169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290267.11e-156PREDICTED: LOW QUALITY PROTEIN: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0346e-88WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2P6PKB41e-150A0A2P6PKB4_ROSCH; Putative transcription factor ssDNA-binding-TF family
STRINGXP_004290267.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-86WHIRLY 2