PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003752.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 346aa    MW: 38668.8 Da    PI: 7.2979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003752.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.6e-14122168455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  FANhyb_rscf00003752.1.g00002.1 122 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 168
                                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.625118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19120185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-20122187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-12122167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-14122172No hitNo description
SMARTSM003531.4E-17124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLTVLVNAGP LELEELNHDD THYSETVSTI LQTQATRWTD SSSNDYVTYS SQSAFAKWTS  60
RADHHLLMPV EGTSQWLLKY ILFSVPFLHT KYRDENSPKS SHDGEGSTQL RKGTSQDELS  120
ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKK IQDLEARNVH  180
LEDDQQRTRS LGEIQRSSSM KELRSGLTVT ERSRVGPPGS DKRKLRIVEG SGGVAVAKPK  240
VVEEPTPPPP PPAPELAPST PMLTGTSLEV SIIESDGLLE LQCPYREGLL LDVMQTLRDL  300
RIETTVVQSS LNSGTFVAEL RAKVGKKTTI TEVKRAVNQV IPQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-15122183869Transcription factor MYC2
5gnj_B2e-15122183869Transcription factor MYC2
5gnj_E2e-15122183869Transcription factor MYC2
5gnj_F2e-15122183869Transcription factor MYC2
5gnj_G2e-15122183869Transcription factor MYC2
5gnj_I2e-15122183869Transcription factor MYC2
5gnj_M2e-15122183869Transcription factor MYC2
5gnj_N2e-15122183869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERRRRE
2127132RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458613.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU41e-108BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLI3WCS50.0I3WCS5_FRAAN; Transcription factor bHLH3
STRINGXP_004290663.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-36bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]