PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003856.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 474aa    MW: 52783.8 Da    PI: 6.5553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003856.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-055272323
                                    ETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                    C  Cg+ F +k+ L rH+r+H
  FANhyb_rscf00003856.1.g00001.1 52 CLSCGMNFYSKEALFRHLRSH 72
                                    55******************9 PP
2zf-C2H213.70.00019232254123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C+ C+k+F++   L  H+ +H
  FANhyb_rscf00003856.1.g00001.1 232 FRCKLCNKTFTSYQALGGHMTSH 254
                                     89******************998 PP
3zf-C2H210.80.0016288309122
                                     EEETTTTEEESSHHHHHHHHHH CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                     y+C++C+++Fs+   L  H ++
  FANhyb_rscf00003856.1.g00001.1 288 YRCNNCDRTFSSFQALGGHKSS 309
                                     9**********99888777665 PP
4zf-C2H210.80.0016344366123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C+ C+k+F + + L  H ++H
  FANhyb_rscf00003856.1.g00001.1 344 HRCHVCNKVFASYHALGGHVSSH 366
                                     79*************99999988 PP
5zf-C2H2120.00062405427123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C+ Cg++F +   L  H+r+H
  FANhyb_rscf00003856.1.g00001.1 405 HQCKVCGTTFQTGQALGGHQRLH 427
                                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.35E-5936No hitNo description
SMARTSM003550.641032IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-91032IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5561037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4734972IPR007087Zinc finger, C2H2
SMARTSM003550.835072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.81E-65172No hitNo description
PROSITE patternPS0002805172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-6227254No hitNo description
PROSITE profilePS5015711.011232259IPR007087Zinc finger, C2H2
SMARTSM003550.0015232254IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-11232254IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
PfamPF139122.2E-8287309IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411288319IPR007087Zinc finger, C2H2
SMARTSM0035517288314IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.32E-7343366No hitNo description
PfamPF139125.5E-8343368IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097344371IPR007087Zinc finger, C2H2
SMARTSM003550.068344366IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-7400427No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4404427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263405432IPR007087Zinc finger, C2H2
SMARTSM003550.085405427IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-8405427IPR007087Zinc finger, C2H2
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MPTPSEALNH ICNICHKGFR SGQALGGHKS MHFRESEAIA SAISTTSDLV CCLSCGMNFY  60
SKEALFRHLR SHNQSLYESL SPQGGYNSSS SSSTVSDHSH EAMFDDDGVD SGFDLSKTLP  120
LGWSCTGKRK RTSSDFSGSD ETAVDSSPGL ELVTFDKKLE AEEFRGLLML AEVCAEEASG  180
RPFVDHDHVY DDEIEIRYVE IKCKRRRLNN EHETRWLATD RYDYNCNDID GFRCKLCNKT  240
FTSYQALGGH MTSHNRLKNN SADPDHDSFS SECKSEQHPH PHPVVNVYRC NNCDRTFSSF  300
QALGGHKSSQ CKDHVNNNTT HSSADISVVK DSNDPAEPRQ DEVHRCHVCN KVFASYHALG  360
GHVSSHSKNK NNNNVDQDQS NSADTSTGSA ENKNERQKLY HTVPHQCKVC GTTFQTGQAL  420
GGHQRLHFKR PTQAPGKSSQ QSSSRKHLEI DLNEIPSMED EDGIYEPSVI LTLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292041.20.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A2P6PNL60.0A0A2P6PNL6_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292041.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3461122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-11C2H2-like zinc finger protein