PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003897.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 252aa MW: 28900.5 Da PI: 4.9023

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003897.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.6	4e-12	9	100	2	97
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 fkv +p + + l lp f + ++ ++++ l+++ r+W v + + ++++ +t+GW++F + ++++ gD FANhyb_rscf00003897.1.g00001.1 9 FKVILP--GSDKTKLDLPPAFRRWVevDLFSAKKARLRVNGGGLRRWFVGF--SYEGRKMCFTRGWEQFRNYHRVRGGD 83 565533..333334778888865555533333333455555555*****..55566689************** PP EEEEEE-SSSEE..EEEEE CS B3 79 fvvFkldgrsefelvvkvf 97 f+vF+++g +f v +f FANhyb_rscf00003897.1.g00001.1 84 FLVFTYEGGVSF--EVDFF 100 ****998777..66666 PP
2	B3	34.9	2.6e-11	171	243	14	90
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ ++p++f+e+h + ++++++ ++g + ++ +k+ +++ +++GW + ++a +++ gD+++ +++g+++ FANhyb_rscf00003897.1.g00001.1 171 SIPTIPRPFFERHIVQ--FKTDIMVVGPDGTERVIRT--NKNNKSVRFGSGWGNLCSAYDIQPGDMLMMEVIGHKRY 243 5569*******433..5569***********..999999***********************9986655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	7.06E-14	4	102	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-15	4	101	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.221	6	103	IPR003340	B3 DNA binding domain
CDD	cd10017	7.27E-10	7	101	No hit	No description
SMART	SM01019	7.3E-5	8	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-8	9	100	IPR003340	B3 DNA binding domain
SMART	SM01019	5.7E-4	165	251	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-12	171	251	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.2E-10	173	250	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-7	174	243	IPR003340	B3 DNA binding domain
CDD	cd10017	2.36E-7	174	239	No hit	No description
PROSITE profile	PS50863	8.529	175	251	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MANKVTSFFK VILPGSDKTK LDLPPAFRRW VEVDLFSAKK ARLRVNGGGL RRWFVGFSYE 60 GRKMCFTRGW EQFRNYHRVR GGDFLVFTYE GGVSFEVDFF DIEGVGRTEF EERNEQITDP 120 DMVEMSSDDE DDVIDEEASE HETERHDVEG EGDDEVEAAN GMSCIMTVGN SIPTIPRPFF 180 ERHIVQFKTD IMVVGPDGTE RVIRTNKNNK SVRFGSGWGN LCSAYDIQPG DMLMMEVIGH 240 KRYRLAITRP RV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_004308495.1	1e-106	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34616	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-10	B3 family protein