PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003977.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 406aa    MW: 44118.6 Da    PI: 5.2179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003977.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013527123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                    + C++C+k+F+    +  H+r+H
  FANhyb_rscf00003977.1.g00001.1  5 HICKICNKRFKGGKAMGGHMRSH 27
                                    68**********99999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-4228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.3E-9327No hitNo description
SMARTSM003550.025527IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-9529IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576679.3E-9234261No hitNo description
SMARTSM003550.11239261IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367239266IPR007087Zinc finger, C2H2
PfamPF139126.1E-12239263IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDKPHICKIC NKRFKGGKAM GGHMRSHLAK LPIPPKQPPP PPPPPATPSP PQRLAHSPEF  60
SSSSSHYIHN NNNNILRIRN INSSVMQMMM VQSPPPAPAT VPASYLKYRE VVDVTAAAAP  120
PSSMDSDSTE SMSKKPTRRR SKRRRKMVVR VVPPPEVSSV TNDTFSSEDC ALSLMMLSRD  180
TWKVKVTNND QVAHVEEEED DEEETEDEEE EEEEEEDDVV FIARTTPKSA SSNYQGGKYK  240
CDTCKKAFQS YQALGGHRAS HKRIRHQVFE EEEDDVDAAD DDEESEEEVV EVGGGGNNGR  300
GGGNGGGGRG GVQGYNGHSG VVEHPPPGCL NVHFVSSCLI LAKHLVGTRS NNFPAASTSN  360
TNTNNAARAS SSSANVSSAN YGDNNLVIDL NLPAPEEELE FSTVSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299308RGGGNGGGGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470645.11e-111PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A2P6SM726e-88A0A2P6SM72_ROSCH; Putative transcription factor C2H2 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3462222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-13C2H2-like zinc finger protein