PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003999.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 348aa    MW: 38245.5 Da    PI: 6.7836
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003999.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.8e-14115166155
                                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  FANhyb_rscf00003999.1.g00001.1 115 QRMTHIAVERNRRRQMNDHLNVLRSLMPPS---YIQRGDQASIVGGAIDFVKELE 166
                                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.34E-12113170No hitNo description
SuperFamilySSF474591.57E-16114182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14115178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MESTKNAQIH TLGELESCVT QDNQQQLYSP ANSEGQDPHQ NNPLSGTVEV GGGCGGGGVV  60
SSDCNQKLQQ LNSAKMSPIQ TQTHLTKTAS SPATRERQKR KRTRPTKNKE EVESQRMTHI  120
AVERNRRRQM NDHLNVLRSL MPPSYIQRGD QASIVGGAID FVKELEQHLQ SLEAQKRTRR  180
AEGFTNANVD PNNNNSMTSS SPSSSSTMTM PSNGMFMSLS QCRIGSTEEG NTCGDDGVTT  240
QNKSEAAEVD VTVIQTHVNL KVQCQKRPGQ LVRALVAFED IRLTVLHLNI TSSEDEVLYS  300
FNLKIEEGCK LGSADDIARA VHQWQLISST TRVGFASLGY NEVVIDQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115126RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469077.10.0PREDICTED: transcription factor bHLH57-like
SwissprotQ9M1283e-67BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A2P6SIV41e-169A0A2P6SIV4_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308405.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.12e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]