PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004083.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 254aa    MW: 28868.4 Da    PI: 6.5134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004083.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd+ l+d +k +G   W++I++  g++R++k+c++rw++yl
  FANhyb_rscf00004083.1.g00001.1 14 KGPWTAEEDKTLADHIKAHGDQKWSSIPKQTGLRRCGKSCRLRWLNYL 61
                                    79********************************************97 PP
2Myb_DNA-binding55.11.7e-1767112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  FANhyb_rscf00004083.1.g00001.1  67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNSHL 112
                                     7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.605961IPR017930Myb domain
SuperFamilySSF466891.98E-2912108IPR009057Homeodomain-like
SMARTSM007173.5E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-251568IPR009057Homeodomain-like
CDDcd001672.05E-91661No hitNo description
PROSITE profilePS5129425.20262116IPR017930Myb domain
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2569115IPR009057Homeodomain-like
CDDcd001671.41E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRRPCCSKE GVNKGPWTAE EDKTLADHIK AHGDQKWSSI PKQTGLRRCG KSCRLRWLNY  60
LRPNIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNS HLCKKSVQPE  120
MSEAAAKNMR LSVDEAKVED HYHSLDSKVV PESSEGSLLS HYSSTTSTTT EESSSDILMD  180
FYTREISLSE FLDTDFTKFS SMISSDKVTM VQGEGVDHIQ TQLPYNSSSQ AEAEAEANEE  240
APMNVIILRK WWTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-301211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305613.11e-154PREDICTED: transcription repressor MYB6-like
TrEMBLA0A2P6Q1J91e-132A0A2P6Q1J9_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004305613.11e-154(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-59myb domain protein 9