PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004108.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 374aa MW: 43181.3 Da PI: 6.7916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004108.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134	1e-41	33	139	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknr 76 +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nr FANhyb_rscf00004108.1.g00001.1 33 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQElcKIGSeDQNEWYFFSHKDKKYPTGTRTNR 110 69**************************.9***********954555552455**************** PP NAM 77 atksgyWkatgkdkevlskkgelvglkktL 106 atk+g+Wkatg+dk+++ +++lvg++ktL FANhyb_rscf00004108.1.g00001.1 111 ATKAGFWKATGRDKAIYI-RHNLVGMRKTL 139 **************.899*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-43	30	151	IPR003441	NAC domain
PROSITE profile	PS51005	37.079	33	193	IPR003441	NAC domain
Pfam	PF02365	3.7E-19	34	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MHVYPHNLHP VLKCPLTLLG GVGLKNMNTF SHVPPGFRFH PTDEELVDYY LRKKIASKKI 60 DLDVIRDVDL YKIEPWDLQE LCKIGSEDQN EWYFFSHKDK KYPTGTRTNR ATKAGFWKAT 120 GRDKAIYIRH NLVGMRKTLE EGWVVCRVFK KRLATVRRMG DYESSCWYDQ SSSFMPELDS 180 PRTNMIPNPA YTTTSSSSSY HQQLYSNCKQ ELDHHLQYNA MPVPPHPDSF LQLPQLESPR 240 VAQYGTYDHH HHRNNGCHVM PSSTFRPEEQ VQQMNQQNLM INSSPLLYND NSLDDQLTDW 300 RVLDKFVASQ LSHDQQEASK ETTANYSNEA VFDPVGDEVH TSMGANESKR PENIIAQDYA 360 ASTSTSSCQI DLWK

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MHVYPHNLHP VLKCPLTLLG GVGLKNMNTF SHVPPGFRFH PTDEELVDYY LRKKIASKKI  60
DLDVIRDVDL YKIEPWDLQE LCKIGSEDQN EWYFFSHKDK KYPTGTRTNR ATKAGFWKAT  120
GRDKAIYIRH NLVGMRKTLE EGWVVCRVFK KRLATVRRMG DYESSCWYDQ SSSFMPELDS  180
PRTNMIPNPA YTTTSSSSSY HQQLYSNCKQ ELDHHLQYNA MPVPPHPDSF LQLPQLESPR  240
VAQYGTYDHH HHRNNGCHVM PSSTFRPEEQ VQQMNQQNLM INSSPLLYND NSLDDQLTDW  300
RVLDKFVASQ LSHDQQEASK ETTANYSNEA VFDPVGDEVH TSMGANESKR PENIIAQDYA  360
ASTSTSSCQI DLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-33	32	139	14	118	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298666.1	0.0	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-115	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A251P556	1e-141	A0A251P556_PRUPE; Uncharacterized protein
STRING	XP_004298666.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-116	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]