PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004278.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 446aa    MW: 50836.9 Da    PI: 9.2247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004278.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-132761898
                                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                    +pkkfa e+g++   s   t+  + g  W+v l  ++  +r+++ +GW eF++   L  g f+vF+++g+s f  +v++f+
  FANhyb_rscf00004278.1.g00001.1  2 IPKKFALEYGEE--LSNGATVIVPAGDIWQVGL--ERAHKRIWFVDGWPEFAEHYSLTGGQFLVFSYQGDSIF--HVRIFD 76
                                    9********855..77789999***********..**********************************9999..999997 PP
2B339.69.4e-13196291199
                                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                     ff v ++  +l+++ l++p  +a +++    ++  +++ed++ ++W+++++++    ++ +++G  eF ++n+Lk+gD+
  FANhyb_rscf00004278.1.g00001.1 196 FFAVILQQGHLNKSYLYVPSAYAMRYMRG--CPEYIKFEDSTANQWDIRCRFTTD-TAVRIGRGCAEFFRENNLKTGDV 271
                                     677778888999999***********744..7789***************76554.4799******************* PP

                                     EEEEE-SSSEE..EEEEE-S CS
                              B3  80 vvFkldgrsefelvvkvfrk 99 
                                     ++ +l+++++  l+++v+r+
  FANhyb_rscf00004278.1.g00001.1 272 LLYELINKKDVVLKFSVLRA 291
                                     ******99999899998875 PP
3B3521.3e-16350440799
                                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                     + + ++++ + +p +f+++h +   ++  + l+ +s ++W  +++y+  + ++ + kG   F+k+n+L++gD++vF+l+
  FANhyb_rscf00004278.1.g00001.1 350 RDYLMTNSVVHVPHEFMKDHLLG--CGSSINLRASSDEQWPARCTYDPLRHTMKIHKGFGTFCKENNLEAGDVCVFELI 426
                                     56778888899*********666..5567******************99999*************************** PP

                                     SSSEE..EEEEE-S CS
                              B3  86 grsefelvvkvfrk 99 
                                     +++ + ++v+vf +
  FANhyb_rscf00004278.1.g00001.1 427 KNEAADFKVSVFHA 440
                                     9999999*999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.422178IPR003340B3 DNA binding domain
SMARTSM010192.9E-4278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-16280IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-12276No hitNo description
SuperFamilySSF1019363.53E-17280IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-9276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-16189290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-16190289IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-11195290No hitNo description
SMARTSM010196.9E-7196292IPR003340B3 DNA binding domain
PfamPF023621.5E-10196291IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955196292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21337441IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19339441IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66344441IPR003340B3 DNA binding domain
SMARTSM010191.4E-10345441IPR003340B3 DNA binding domain
CDDcd100179.62E-15345438No hitNo description
PfamPF023625.9E-14350440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
DIPKKFALEY GEELSNGATV IVPAGDIWQV GLERAHKRIW FVDGWPEFAE HYSLTGGQFL  60
VFSYQGDSIF HVRIFDFSCC EIEYPSVGQI IKHEEYVEDD VCGTLPSSGK GKGKCVDQHV  120
TRKRKSVAIA KKLKKAKLMV QRMPPSHDDP RRKKEYKEIF VGNMAAYTLP CMITKIAKER  180
QKLIHAIQMF KLENPFFAVI LQQGHLNKSY LYVPSAYAMR YMRGCPEYIK FEDSTANQWD  240
IRCRFTTDTA VRIGRGCAEF FRENNLKTGD VLLYELINKK DVVLKFSVLR AAGNAVMVHG  300
KKKNSDIHDR GTLYLSKKIN AMVISRETKK AMKAAKALKI ENPAFMVILR DYLMTNSVVH  360
VPHEFMKDHL LGCGSSINLR ASSDEQWPAR CTYDPLRHTM KIHKGFGTFC KENNLEAGDV  420
CVFELIKNEA ADFKVSVFHA SDYASV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1817444326145B3 domain-containing transcription factor VRN1
4i1k_B3e-1817444326145B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125TRKRKS
2122133KRKSVAIAKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309082.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6SPQ20.0A0A2P6SPQ2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004309082.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-43B3 family protein