PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004298.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 363aa    MW: 40178.8 Da    PI: 11.6644
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004298.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP72.86.1e-23189239151
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe 51 
                                     +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr  +
  FANhyb_rscf00004298.1.g00001.1 189 RCQAEGCHADLSQAKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRLSH 239
                                     6***********************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.2E-24185238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.495187264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-22188242IPR004333Transcription factor, SBP-box
PfamPF031101.4E-17190242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
SRTYYKSSLN PLKLGARFGS GGSESQQNKV SKNKRRRRGN AGLRMGHPFL RHSGWIRVRR  60
LQQPPPSSAS AAAAALGLRS AFRPVPDPGP PGALPLRPQR LRQRVVLRAD DAPPPPQHSM  120
LSLDPSIPAG HHGLMLIPKS EDMCPPTDFA TRIGLNLGGR TYFSSEDDFM NRLYRRSRPA  180
DHGPLNSPRC QAEGCHADLS QAKHYHRRHK VCEFHSKAST VIANGLTQRF CQQCSRLSHT  240
RNYCRTLSPN TVSLSLNDAN APSSTLHGRR SIFLRSLTTE NAAAGRDWPI TTVAGENLSN  300
QVKKTAALNR GRKLTGIHLQ TTSFVFGCDC GRVAAANWVG LFQAKATNHN LFRVIKLTFF  360
LKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-18190237653squamosa promoter-binding protein-like 12
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.27e-46squamosa promoter binding protein-like 8