PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004373.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 264aa    MW: 30270.5 Da    PI: 5.1943
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004373.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-131792354298
                                     TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     + +sW++++    + +++ l++GW eFv++n+LkegD++vF l+++ +  + v++fr
  FANhyb_rscf00004373.1.g00001.1 179 NKKSWSLNIYQGIRNKSFKLQAGWPEFVRENNLKEGDVCVFVLNETIRYVFDVTIFR 235
                                     679******44555556*************************987655555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-14164237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-12171236IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-10174225IPR003340B3 DNA binding domain
CDDcd100173.94E-12181235No hitNo description
PROSITE profilePS5086311.561181237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
NDDDDDDDDE EEENDDEDDD FENEANSEDK DEYVEEEVES DRDEGKSDDS IEILDEFPQC  60
SKAKTKRTSS RLHKRKINSS QAKSQSSKRR ASGWSSNRRI KALKQNGTGE LIARHRAADF  120
MSKSADPSCL IVMSPSVRSP RTRKFNGEIA GWGRASIFLV ILATDISKMK CSHINLRVNK  180
KSWSLNIYQG IRNKSFKLQA GWPEFVRENN LKEGDVCVFV LNETIRYVFD VTIFRATEAT  240
DCTLPRGKTK KMKTESWTDE VHRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470561.11e-119PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A2P6RMW93e-57A0A2P6RMW9_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308669.11e-123(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3465122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-10related to vernalization1 1