PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004488.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 226aa MW: 25454 Da PI: 10.075

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004488.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+d+++ +G g W++I+++ g++R++k+c++rw++yl FANhyb_rscf00004488.1.g00001.1 14 RGAWTALEDQILIDYINTHGEGKWRRIPKEAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ FANhyb_rscf00004488.1.g00001.1 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 7999****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.89	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.87E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.23E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.227	62	116	IPR017930	Myb domain
SMART	SM00717	4.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.12E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGRSPCCVKE GLNRGAWTAL EDQILIDYIN THGEGKWRRI PKEAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKVKNGQ 120 DDVVENKNEK KKKKKNKTKS LTRVLDSITA VRTKAMRCNN SVAVTSHLQP LPLVETVQGV 180 ALDEGIKNSE EDNATSTTTT TTTTSTSDDF VLDFDVGKLF NVSENI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305612.1	1e-134	PREDICTED: transcription repressor MYB6-like
Swissprot	P10290	6e-62	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A2P6Q1H9	1e-116	A0A2P6Q1H9_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004305612.1	1e-133	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-62	myb domain protein 3

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]