PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004683.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 486aa    MW: 55386.1 Da    PI: 9.5271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004683.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.1e-1511100199
                                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT- CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegD 78 
                                     ffkvl   d ++++ l++p kf++ h + +  + + +l+ + g++ +v+l  ++++++ ++ + GW +Fvk++ L+ gD
  FANhyb_rscf00004683.1.g00001.1  11 FFKVL--LDDFANH-LRIPHKFTRYH-IRPSLG-KCVLRGPCGKR-SVEL--ERRKNGlFFHSHGWHSFVKDHLLQFGD 81 
                                     89999..9*****9.********766.444444.899***99976.6888..666666588899*************** PP

                                     EEEEEE-SSSEE..EEEEE-S CS
                              B3  79 fvvFkldgrsefelvvkvfrk 99 
                                     f+vF++dg+s+f  +vk++++
  FANhyb_rscf00004683.1.g00001.1  82 FLVFQYDGKSKF--KVKAYDR 100
                                     *******99999..8888876 PP
2B335.51.8e-112402894799
                                     EEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  47 evkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +v+l  ++++++ ++ + GW +Fvk++ L+ gDf+vF++dg+s+f  +vkv+++
  FANhyb_rscf00004683.1.g00001.1 240 SVEL--ERRKNGlFFHSHGWHSFVKDHLLQFGDFLVFQYDGKSKF--KVKVYDR 289
                                     5666..666666588899**********************99999..9998887 PP
3B342.11.6e-133834621298
                                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                     ++ r+ +pk+ + + g+k  ++ t+ +ed++gr W  kl    k++ + +++GW e  kan++ +gD+vvF+++++  +
  FANhyb_rscf00004683.1.g00001.1 383 SRYRMAIPKDLVVSKGLK--SKNTVEIEDSTGRLWPAKL---VKGNYVSMSTGWGECSKANNIVVGDTVVFEFVQQ--T 454
                                     56799**********999..4559***************...555678899*********************8874..4 PP

                                     ..EEEEE- CS
                              B3  91 elvvkvfr 98 
                                      ++++vf+
  FANhyb_rscf00004683.1.g00001.1 455 VMRLHVFK 462
                                     45666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-196106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-186103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.7148101IPR003340B3 DNA binding domain
CDDcd100175.56E-16999No hitNo description
SMARTSM010194.9E-1511101IPR003340B3 DNA binding domain
PfamPF023622.7E-1211100IPR003340B3 DNA binding domain
SMARTSM010190.0013196290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-12228292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13228292IPR015300DNA-binding pseudobarrel domain
CDDcd100175.93E-10231288No hitNo description
PfamPF023621.2E-8240289IPR003340B3 DNA binding domain
PROSITE profilePS508639.939240290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-16367463IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16367463IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-14373464IPR003340B3 DNA binding domain
CDDcd100173.98E-11373462No hitNo description
PfamPF023624.5E-11383462IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279386464IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGRKPTKQPS FFKVLLDDFA NHLRIPHKFT RYHIRPSLGK CVLRGPCGKR SVELERRKNG  60
LFFHSHGWHS FVKDHLLQFG DFLVFQYDGK SKFKVKAYDR TCCEIDVEVP KRRNGLPTAP  120
SVNEGYQLAW VKDEILDGLE TENCNSDTEN ADKRRRNNYG RTPKVEDGKE TSTRPIIFKS  180
EYSCFQATLK GSAPVISTVD FDVDLTEPFD FFKIDGGDDG YHIRPSLGKC VLRGPCGKRS  240
VELERRKNGL FFHSHGWHSF VKDHLLQFGD FLVFQYDGKS KFKVKVYDRT CCEIDVEVPK  300
RRNGLPTAPS VNEGYQLAWV KDEILDGLET ENCNSDTENA DKRRRNNYGR TPKVEDGKET  360
STRPIIFKSE YSCFQATLKG RCSRYRMAIP KDLVVSKGLK SKNTVEIEDS TGRLWPAKLV  420
KGNYVSMSTG WGECSKANNI VVGDTVVFEF VQQTVMRLHV FKKGLGTRGG NNMSISVVLD  480
APIIKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462396.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A2P6QAK51e-139A0A2P6QAK5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004297926.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-13B3 family protein